Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OR613_RS17025 Genome accession   NZ_CP112887
Coordinates   3499030..3499653 (-) Length   207 a.a.
NCBI ID   WP_100685620.1    Uniprot ID   A0AAJ5QSM8
Organism   Klebsiella electrica strain S2-IND-01-C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3494030..3504653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OR613_RS17010 (OR613_17010) helD 3494266..3496320 (-) 2055 WP_131048349.1 DNA helicase IV -
  OR613_RS17015 (OR613_17015) - 3496443..3496889 (+) 447 WP_100685622.1 YccF domain-containing protein -
  OR613_RS17020 (OR613_17020) yccS 3496907..3499042 (+) 2136 WP_100685621.1 YccS family putative transporter -
  OR613_RS17025 (OR613_17025) sxy/tfoX 3499030..3499653 (-) 624 WP_100685620.1 TfoX/Sxy family DNA transformation protein Regulator
  OR613_RS17030 (OR613_17030) sulA 3500113..3500622 (+) 510 WP_100685619.1 SOS-induced cell division inhibitor SulA -
  OR613_RS17035 (OR613_17035) ompA 3500975..3502048 (+) 1074 WP_100685640.1 porin OmpA -
  OR613_RS17040 (OR613_17040) matP 3502154..3502606 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  OR613_RS17045 (OR613_17045) - 3502792..3504549 (+) 1758 WP_131048348.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23471.23 Da        Isoelectric Point: 10.1875

>NTDB_id=758667 OR613_RS17025 WP_100685620.1 3499030..3499653(-) (sxy/tfoX) [Klebsiella electrica strain S2-IND-01-C]
MKKISSLRFHQFQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWRDSKTLFNLSASSLQSARNEKRRQRASGRLKDLPNISFHMELLLINAGVSDEKMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWAGTQHKKIDAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=758667 OR613_RS17025 WP_100685620.1 3499030..3499653(-) (sxy/tfoX) [Klebsiella electrica strain S2-IND-01-C]
ATGAAGAAAATTTCATCTTTACGGTTCCATCAATTCCAGGAATGTTTATCTCCACTCGGTAAAATAAGCTGTCGCCCGCT
CTTTGGCGGCTATAGCCTTGCCATCGACGATACCGTTTTTGCTATGGTCGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGTGTGGTGCATGCCACCCCTCTTTTGACGATGCGGAAAAATGGTCGCCCGGTCTTGCTGAAA
TATTATCAGGTTGACGAGACTCTCTGGCGTGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGCGCACG
TAATGAAAAGCGACGACAACGCGCTTCCGGAAGATTAAAAGATCTCCCGAATATCAGTTTTCATATGGAACTGCTGCTAA
TTAACGCGGGGGTGAGCGATGAAAAAATGTTGCGTCAGTTTGGTGCGGAGAAAGTCTGGCTGAAATTGCGGGAGTCGAAC
AAAGCGCTCACGTTGAACGTTCTCTATGCGCTGGAAGGGGCGATTGCCGGAGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTATGGGCCGGCACCCAGCACAAAAAAATCGATGCTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.284

95.169

0.498