Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   QJQ47_RS11240 Genome accession   NZ_CP124612
Coordinates   2392246..2392599 (+) Length   117 a.a.
NCBI ID   WP_316907001.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY3649     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2387246..2397599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJQ47_RS11215 (QJQ47_11225) fabF 2387458..2388702 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  QJQ47_RS11220 (QJQ47_11230) pabC 2388702..2389517 (+) 816 WP_003091129.1 aminodeoxychorismate lyase -
  QJQ47_RS11225 (QJQ47_11235) mltG 2389523..2390572 (+) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  QJQ47_RS11230 (QJQ47_11240) tmk 2390601..2391233 (+) 633 WP_003091125.1 dTMP kinase -
  QJQ47_RS11235 (QJQ47_11245) - 2391226..2392212 (+) 987 WP_019371632.1 DNA polymerase III subunit delta' -
  QJQ47_RS11240 (QJQ47_11250) pilZ 2392246..2392599 (+) 354 WP_316907001.1 PilZ domain-containing protein Machinery gene
  QJQ47_RS11245 (QJQ47_11255) - 2392614..2393390 (+) 777 WP_003091117.1 TatD family hydrolase -
  QJQ47_RS11250 (QJQ47_11260) - 2393616..2394749 (-) 1134 WP_034040026.1 aminotransferase class V-fold PLP-dependent enzyme -
  QJQ47_RS11255 (QJQ47_11265) - 2394835..2395473 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  QJQ47_RS11260 (QJQ47_11270) - 2395623..2396519 (+) 897 WP_034040028.1 radical SAM protein -
  QJQ47_RS11265 (QJQ47_11275) - 2396584..2397216 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 12761.78 Da        Isoelectric Point: 9.7811

>NTDB_id=758660 QJQ47_RS11240 WP_316907001.1 2392246..2392599(+) (pilZ) [Pseudomonas aeruginosa strain NY3649]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEVPVAGKVVWITPKGAQGN
RAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 354 bp        

>NTDB_id=758660 QJQ47_RS11240 WP_316907001.1 2392246..2392599(+) (pilZ) [Pseudomonas aeruginosa strain NY3649]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAAGTCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGCAAC
CGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGGGGC
GCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

92.308

0.453
  pilZ Legionella pneumophila strain ERS1305867

49.074

92.308

0.453