Detailed information NTG0758647

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJQ47_RS07850
• Genome accession: NZ_CP124612
• Coordinates: 1666887..1667891 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NY3649
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1661887..1672891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJQ47_RS07820 (QJQ47_07830)	fghA	1661979..1662830 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
QJQ47_RS07825 (QJQ47_07835)	ispF	1662901..1663374 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJQ47_RS07830 (QJQ47_07840)	truD	1663371..1664438 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
QJQ47_RS07835 (QJQ47_07845)	surE	1664426..1665175 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QJQ47_RS07840 (QJQ47_07850)	-	1665208..1665843 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QJQ47_RS07845 (QJQ47_07855)	-	1665889..1666782 (+)	894	WP_034040673.1	peptidoglycan DD-metalloendopeptidase family protein	-
QJQ47_RS07850 (QJQ47_07860)	rpoS	1666887..1667891 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QJQ47_RS07855 (QJQ47_07865)	fdxA	1668318..1668641 (-)	324	WP_003092272.1	ferredoxin FdxA	-
QJQ47_RS07860 (QJQ47_07870)	mutS	1668708..1671275 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QJQ47_RS07865 (QJQ47_07875)	-	1671401..1672408 (-)	1008	WP_003113874.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=758647 QJQ47_RS07850 WP_003113871.1 1666887..1667891(+) (rpoS) [Pseudomonas aeruginosa strain NY3649]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=758647 QJQ47_RS07850 WP_003113871.1 1666887..1667891(+) (rpoS) [Pseudomonas aeruginosa strain NY3649]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653