Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QJQ47_RS02445 Genome accession   NZ_CP124612
Coordinates   500376..500741 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain NY3649     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495376..505741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJQ47_RS02415 (QJQ47_02415) pyrR 495998..496510 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  QJQ47_RS02420 (QJQ47_02420) ruvX 496622..497056 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  QJQ47_RS02425 (QJQ47_02425) - 497056..497625 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  QJQ47_RS02430 (QJQ47_02430) - 497674..498567 (-) 894 WP_003162015.1 energy transducer TonB -
  QJQ47_RS02435 (QJQ47_02435) gshB 498714..499667 (-) 954 WP_031801359.1 glutathione synthase -
  QJQ47_RS02440 (QJQ47_02440) pilG 499922..500329 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  QJQ47_RS02445 (QJQ47_02445) pilH 500376..500741 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  QJQ47_RS02450 (QJQ47_02450) - 500792..501328 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  QJQ47_RS02455 (QJQ47_02455) pilJ 501413..503461 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  QJQ47_RS02460 (QJQ47_02460) pilK 503522..504397 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=758635 QJQ47_RS02445 WP_003084587.1 500376..500741(+) (pilH) [Pseudomonas aeruginosa strain NY3649]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=758635 QJQ47_RS02445 WP_003084587.1 500376..500741(+) (pilH) [Pseudomonas aeruginosa strain NY3649]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGTAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364