NTDB

Overview

Name	tsaP	Type	Machinery gene
Locus tag	QJQ47_RS00100	Genome accession	NZ_CP124612
Coordinates	21527..22552 (+)	Length	341 a.a.
NCBI ID	WP_003097294.1	Uniprot ID	A0A0H2ZJL6
Organism	Pseudomonas aeruginosa strain NY3649
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16527..27552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJQ47_RS00075 (QJQ47_00075)	-	16716..17033 (-)	318	WP_003097288.1	tetratricopeptide repeat protein	-
QJQ47_RS00080 (QJQ47_00080)	trkA	17181..18554 (-)	1374	WP_003111375.1	Trk system potassium transporter TrkA	-
QJQ47_RS00085 (QJQ47_00085)	rsmB	18582..19886 (-)	1305	WP_034040398.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
QJQ47_RS00090 (QJQ47_00090)	fmt	19883..20827 (-)	945	WP_023090531.1	methionyl-tRNA formyltransferase	-
QJQ47_RS00095 (QJQ47_00095)	def	20882..21388 (-)	507	WP_003107059.1	peptide deformylase	-
QJQ47_RS00100 (QJQ47_00100)	tsaP	21527..22552 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
QJQ47_RS00105 (QJQ47_00105)	dprA	22687..23775 (+)	1089	WP_024928550.1	DNA-processing protein DprA	Machinery gene
QJQ47_RS00110 (QJQ47_00110)	-	23816..24373 (+)	558	WP_023120094.1	L-threonylcarbamoyladenylate synthase	-
QJQ47_RS00115 (QJQ47_00115)	-	24383..25360 (-)	978	WP_003111202.1	NADPH:quinone reductase	-
QJQ47_RS00120 (QJQ47_00120)	hemF	25551..26468 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
QJQ47_RS00125 (QJQ47_00125)	aroE	26526..27350 (+)	825	WP_030047943.1	shikimate dehydrogenase	-

Sequence

Protein

Download Length: 341 a.a. Molecular weight: 37586.01 Da Isoelectric Point: 9.3358

                                >NTDB_id=758628 QJQ47_RS00100 WP_003097294.1 21527..22552(+) (tsaP) [Pseudomonas aeruginosa strain NY3649]

MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV

DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA

RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP

GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL

SYALVLMASRPLSVTDRVQNP

Nucleotide

Download Length: 1026 bp

                                >NTDB_id=758628 QJQ47_RS00100 WP_003097294.1 21527..22552(+) (tsaP) [Pseudomonas aeruginosa strain NY3649]

ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA

TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC

CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTT

GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC

GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA

AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT

CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA

AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA

CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC

GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT

CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG

ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG

AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393

Detailed information NTG0758628