Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   H7R60_RS01930 Genome accession   NZ_AP021927
Coordinates   390863..392302 (+) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain WP2-W18-ESBL-01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385863..397302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R60_RS01900 (WP2W18E01_03580) mlaF 386441..387241 (-) 801 WP_182935710.1 phospholipid ABC transporter ATP-binding protein MlaF -
  H7R60_RS01905 (WP2W18E01_03590) - 387448..388443 (+) 996 WP_042880205.1 KpsF/GutQ family sugar-phosphate isomerase -
  H7R60_RS01910 (WP2W18E01_03600) kdsC 388443..388997 (+) 555 WP_041214035.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  H7R60_RS01915 (WP2W18E01_03610) lptC 388994..389554 (+) 561 WP_069652282.1 LPS export ABC transporter periplasmic protein LptC -
  H7R60_RS01920 (WP2W18E01_03620) lptA 389541..390059 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  H7R60_RS01925 (WP2W18E01_03630) lptB 390072..390797 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  H7R60_RS01930 (WP2W18E01_03640) rpoN/rpoN1 390863..392302 (+) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  H7R60_RS01935 (WP2W18E01_03650) hpf 392323..392610 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  H7R60_RS01940 (WP2W18E01_03660) ptsN 392613..393059 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  H7R60_RS01945 (WP2W18E01_03670) rapZ 393100..393966 (+) 867 WP_010675869.1 RNase adapter RapZ -
  H7R60_RS01950 (WP2W18E01_03680) npr 393987..394259 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  H7R60_RS01955 (WP2W18E01_03690) - 394275..396179 (-) 1905 WP_182935711.1 BglG family transcription antiterminator -
  H7R60_RS01960 (WP2W18E01_03700) dagF 396283..397023 (-) 741 WP_182935712.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=75861 H7R60_RS01930 WP_039040474.1 390863..392302(+) (rpoN/rpoN1) [Aeromonas caviae strain WP2-W18-ESBL-01]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=75861 H7R60_RS01930 WP_039040474.1 390863..392302(+) (rpoN/rpoN1) [Aeromonas caviae strain WP2-W18-ESBL-01]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGACGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTCCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment