Detailed information NTG0758586

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QIU11_RS23675
• Genome accession: NZ_CP124600
• Coordinates: 5006937..5007941 (-)
• Length: 334 a.a.
• NCBI ID: WP_050157670.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain Li010
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5001937..5012941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QIU11_RS23660 (QIU11_23660)	-	5002421..5003428 (+)	1008	WP_003098486.1	TolB family protein	-
QIU11_RS23665 (QIU11_23665)	mutS	5003554..5006120 (+)	2567	Protein_4676	DNA mismatch repair protein MutS	-
QIU11_RS23670 (QIU11_23670)	fdxA	5006187..5006510 (+)	324	WP_003092272.1	ferredoxin FdxA	-
QIU11_RS23675 (QIU11_23675)	rpoS	5006937..5007941 (-)	1005	WP_050157670.1	RNA polymerase sigma factor RpoS	Regulator
QIU11_RS23680 (QIU11_23680)	-	5008046..5008939 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
QIU11_RS23685 (QIU11_23685)	-	5008985..5009620 (-)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QIU11_RS23690 (QIU11_23690)	surE	5009653..5010402 (-)	750	WP_033867874.1	5'/3'-nucleotidase SurE	-
QIU11_RS23695 (QIU11_23695)	truD	5010390..5011457 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
QIU11_RS23700 (QIU11_23700)	ispF	5011454..5011927 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QIU11_RS23705 (QIU11_23705)	fghA	5011998..5012849 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38249.41 Da
• Isoelectric Point: 5.0478

>NTDB_id=758586 QIU11_RS23675 WP_050157670.1 5006937..5007941(-) (rpoS) [Pseudomonas aeruginosa strain Li010]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVIKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=758586 QIU11_RS23675 WP_050157670.1 5006937..5007941(-) (rpoS) [Pseudomonas aeruginosa strain Li010]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGATCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.159	98.204	0.65