Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   ORF34_RS06275 Genome accession   NZ_CP112873
Coordinates   1208433..1209386 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain O4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1203433..1214386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORF34_RS06250 (ORF34_06250) argF 1205265..1206224 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  ORF34_RS06255 (ORF34_06255) yjzC 1206310..1206489 (+) 180 WP_003245356.1 YjzC family protein -
  ORF34_RS06260 (ORF34_06260) yjzD 1206535..1206720 (-) 186 WP_003245236.1 YjzD family protein -
  ORF34_RS06265 (ORF34_06265) - 1206969..1207703 (+) 735 WP_003245223.1 hypothetical protein -
  ORF34_RS06270 (ORF34_06270) - 1207785..1208342 (+) 558 WP_003232974.1 hypothetical protein -
  ORF34_RS06275 (ORF34_06275) med 1208433..1209386 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  ORF34_RS06280 (ORF34_06280) comZ 1209401..1209592 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  ORF34_RS06285 (ORF34_06285) yjzB 1209622..1209861 (-) 240 WP_003232972.1 spore coat protein YjzB -
  ORF34_RS06290 (ORF34_06290) fabH 1210026..1210964 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  ORF34_RS06295 (ORF34_06295) fabF 1210987..1212228 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  ORF34_RS06300 (ORF34_06300) yjaZ 1212304..1213089 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  ORF34_RS06305 (ORF34_06305) appD 1213281..1214267 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=758563 ORF34_RS06275 WP_003245494.1 1208433..1209386(+) (med) [Bacillus subtilis strain O4]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=758563 ORF34_RS06275 WP_003245494.1 1208433..1209386(+) (med) [Bacillus subtilis strain O4]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1