Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QIU11_RS11180 Genome accession   NZ_CP124600
Coordinates   2326673..2327269 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain Li010     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2321673..2332269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIU11_RS11155 (QIU11_11155) - 2322606..2322983 (+) 378 WP_003083354.1 hypothetical protein -
  QIU11_RS11165 (QIU11_11165) - 2323238..2324104 (-) 867 WP_003122917.1 ABC transporter substrate-binding protein -
  QIU11_RS11170 (QIU11_11170) dnaX 2324141..2326222 (+) 2082 WP_058176863.1 DNA polymerase III subunit gamma/tau -
  QIU11_RS11175 (QIU11_11175) - 2326268..2326594 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  QIU11_RS11180 (QIU11_11180) recR 2326673..2327269 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  QIU11_RS11185 (QIU11_11185) - 2327392..2328540 (+) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  QIU11_RS11190 (QIU11_11190) - 2328553..2329092 (-) 540 WP_003103931.1 CbrC family protein -
  QIU11_RS11195 (QIU11_11195) - 2329166..2330053 (-) 888 WP_023084426.1 SDR family NAD(P)-dependent oxidoreductase -
  QIU11_RS11200 (QIU11_11200) - 2330050..2331633 (-) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  QIU11_RS11205 (QIU11_11205) - 2331756..2331875 (+) 120 Protein_2216 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=758554 QIU11_RS11180 WP_003087237.1 2326673..2327269(+) (recR) [Pseudomonas aeruginosa strain Li010]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=758554 QIU11_RS11180 WP_003087237.1 2326673..2327269(+) (recR) [Pseudomonas aeruginosa strain Li010]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTTGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48