Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ORF34_RS00245 Genome accession   NZ_CP112873
Coordinates   44439..44729 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain O4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39439..49729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORF34_RS00205 (ORF34_00205) darA 39462..39791 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  ORF34_RS00210 (ORF34_00210) yaaR 39804..40244 (+) 441 WP_009966249.1 YaaR family protein -
  ORF34_RS00215 (ORF34_00215) holB 40256..41245 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  ORF34_RS00220 (ORF34_00220) ricT 41248..42075 (+) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  ORF34_RS00225 (ORF34_00225) yabA 42090..42449 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  ORF34_RS00230 (ORF34_00230) trmNF 42508..43251 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ORF34_RS00235 (ORF34_00235) yazA 43238..43537 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  ORF34_RS00240 (ORF34_00240) rsmI 43512..44390 (+) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ORF34_RS00245 (ORF34_00245) abrB 44439..44729 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  ORF34_RS00250 (ORF34_00250) metG 45224..47218 (+) 1995 WP_003226758.1 methionine--tRNA ligase -
  ORF34_RS00255 (ORF34_00255) dayD 47297..48064 (+) 768 WP_003226756.1 TatD family hydrolase -
  ORF34_RS00260 (ORF34_00260) yabE 48220..49533 (+) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=758540 ORF34_RS00245 WP_003226760.1 44439..44729(-) (abrB) [Bacillus subtilis strain O4]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=758540 ORF34_RS00245 WP_003226760.1 44439..44729(-) (abrB) [Bacillus subtilis strain O4]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1