Detailed information NTG0758490

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OH540_RS21450
• Genome accession: NZ_CP124542
• Coordinates: 4716479..4717477 (+)
• Length: 332 a.a.
• NCBI ID: WP_031044499.1
• Uniprot ID: A0A191UZ34
• Organism: Streptomyces sp. BPPL-273
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4711479..4722477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH540_RS21425 (OH540_21425)	-	4711884..4712537 (+)	654	WP_283014758.1	TetR/AcrR family transcriptional regulator	-
OH540_RS21430 (OH540_21430)	-	4712720..4714255 (+)	1536	WP_064728384.1	MFS transporter	-
OH540_RS21435 (OH540_21435)	-	4714356..4714847 (-)	492	WP_064728383.1	MarR family transcriptional regulator	-
OH540_RS21440 (OH540_21440)	-	4714965..4715750 (+)	786	WP_226486512.1	class III extradiol ring-cleavage dioxygenase	-
OH540_RS21445 (OH540_21445)	-	4715779..4716294 (-)	516	WP_283015883.1	GNAT family N-acetyltransferase	-
OH540_RS21450 (OH540_21450)	rpoS	4716479..4717477 (+)	999	WP_031044499.1	sigma-70 family RNA polymerase sigma factor	Regulator
OH540_RS21455 (OH540_21455)	-	4717890..4718573 (+)	684	WP_283014759.1	TetR family transcriptional regulator	-
OH540_RS21460 (OH540_21460)	-	4718680..4719657 (-)	978	WP_064731804.1	YafY family protein	-
OH540_RS21465 (OH540_21465)	-	4719720..4721267 (+)	1548	WP_283014760.1	MFS transporter	-
OH540_RS21470 (OH540_21470)	-	4721394..4722155 (+)	762	WP_189397684.1	DeoR/GlpR family DNA-binding transcription regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37140.83 Da
• Isoelectric Point: 4.9735

>NTDB_id=758490 OH540_RS21450 WP_031044499.1 4716479..4717477(+) (rpoS) [Streptomyces sp. BPPL-273]
MATRAVARRKSATGETSGAATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARSTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=758490 OH540_RS21450 WP_031044499.1 4716479..4717477(+) (rpoS) [Streptomyces sp. BPPL-273]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCGCGGCAACCAGCGTCCGCGCCAACGG
CGGAGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCCGGTGTGTTCGCGCGGCAGGTCCTCGAAGGCTACGAGGAGACCGGGGCGGAT
GCCACCCGTGAGGAACTCCAGGCCCTGATCGACGAGAGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTCGCGGTGGCCCGCCGCTACCCGCGCAGCGGCCTCCCGCTGCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACCTACGCGACCTGGTGGATCCGGCAGGCCATC
ACCCGGTCCATCGCCGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGCGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGAGCCGGAGCCCGCCGAGATCGCGGCCGAGCTGGGCTCGACCCCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCCGTGTCGCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACCGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGACTCACCCGCGAGCGCATCCGGCAGATCGAGAAGCACGCACTGCTCGAACTGAAG
AAGCTGGCTCGTTCCACCGGGTTCGAGGCCGCGGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

3D structure

• AlphaFold DB: A0A191UZ34

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364