Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OH540_RS11220 Genome accession   NZ_CP124542
Coordinates   2555645..2557870 (-) Length   741 a.a.
NCBI ID   WP_226486834.1    Uniprot ID   A0ABV5D6C6
Organism   Streptomyces sp. BPPL-273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2550645..2562870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH540_RS11190 (OH540_11190) rnc 2551408..2552241 (-) 834 WP_189397761.1 ribonuclease III -
  OH540_RS11195 (OH540_11195) rpmF 2552249..2552422 (-) 174 WP_003951102.1 50S ribosomal protein L32 -
  OH540_RS11200 (OH540_11200) - 2552425..2553078 (-) 654 WP_064730020.1 YceD family protein -
  OH540_RS11205 (OH540_11205) - 2553208..2554326 (-) 1119 WP_226486833.1 ATP synthase F0 subunit B -
  OH540_RS11210 (OH540_11210) coaD 2554448..2554927 (-) 480 WP_064730018.1 pantetheine-phosphate adenylyltransferase -
  OH540_RS11215 (OH540_11215) rsmD 2554954..2555541 (-) 588 WP_064730017.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OH540_RS11220 (OH540_11220) recG 2555645..2557870 (-) 2226 WP_226486834.1 ATP-dependent DNA helicase RecG Machinery gene
  OH540_RS11225 (OH540_11225) - 2557924..2559729 (-) 1806 WP_283014051.1 DAK2 domain-containing protein -
  OH540_RS11230 (OH540_11230) rpmB 2559993..2560178 (+) 186 WP_079163674.1 50S ribosomal protein L28 -
  OH540_RS11235 (OH540_11235) thiD 2560326..2561123 (-) 798 WP_064730014.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OH540_RS11240 (OH540_11240) - 2561120..2562088 (-) 969 WP_064730013.1 thiamine-phosphate kinase -
  OH540_RS11245 (OH540_11245) - 2562316..2562549 (+) 234 WP_019328745.1 Lrp/AsnC ligand binding domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79900.48 Da        Isoelectric Point: 6.3624

>NTDB_id=758462 OH540_RS11220 WP_226486834.1 2555645..2557870(-) (recG) [Streptomyces sp. BPPL-273]
MDLVPGLREPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHSFASSRA
PRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRAADEDEASESVESWA
GALIPLYPATAKLESWKIGKAIQTVLPSAQEAVDPLPASLREGRGLVSLPEALLKIHRPHTKADIEDARARLKWDEAFVL
QVALARRRHAETQLPAVPRRPLPDGLLAAFDDRLPFTLTDGQRKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAML
AVVDAGGQAVMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGAEHATKVVLLTGSMGAAARRAALLDLATGEAGIVIGTHA
LIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVV
PAADKPHFLSRAWERVREEVSNGHQAYVVCPRIGDEADDPGRKGGAGKASPEDDAEKRPPLAVLDVAGQLAKGPLEGLKV
EILHGRMPPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEM
PEASAARQRLNAVAGTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEARQEAAALVAADPELTGVP
GLRTALEALLDEQREQYLEKG

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=758462 OH540_RS11220 WP_226486834.1 2555645..2557870(-) (recG) [Streptomyces sp. BPPL-273]
ATGGATCTCGTGCCCGGACTGCGTGAACCCCTGAAGAAGGTGCTCGGACCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGACCTCCTCCACCACTACCCGCGCAGATACGAGGAGCGCGGCCAGCTCACCCACCTCGCCG
ACCTGCCCATGGACGAACACGTCACGGTGGTCGCGCAGGTCGCCGACGCCCGGCTGCACTCCTTCGCCTCGTCCAGGGCA
CCTCGCGGCAAGGGCCAGCGCCTCGAAGTGACCATCACGGACGGCAGCGGCCGCCTCCAACTGGTCTTCTTCGGCAACGG
CGTGCACAAGCCGCACAAGGAACTCCTCCCCGGCACCCGCGCGATGTTCGCGGGCAAGGTCTCCGTCTTCAACCGACGCC
TCCAACTGGCCCATCCTGCCTACGAGTTGCTGCGCGCCGCCGACGAGGACGAGGCGAGCGAGAGCGTCGAGTCCTGGGCC
GGCGCCCTCATCCCGCTCTACCCGGCCACCGCCAAACTGGAGTCCTGGAAGATCGGCAAGGCGATCCAGACGGTGCTGCC
GAGCGCCCAGGAGGCCGTCGACCCGCTGCCCGCCTCCCTGCGCGAGGGCCGGGGCCTGGTCTCCCTGCCCGAGGCCCTCC
TCAAGATCCACCGCCCGCACACCAAGGCCGACATCGAGGACGCCCGCGCCCGCCTGAAGTGGGACGAGGCCTTCGTCCTC
CAGGTGGCCCTCGCCCGCCGCCGGCACGCCGAGACCCAACTCCCCGCCGTCCCCCGCAGACCCCTCCCCGACGGCCTCCT
CGCCGCCTTCGACGACCGCCTCCCCTTCACCCTCACCGACGGCCAGCGCAAGGTCTCCCGCGAGATCTTCGACGACCTCG
CCACCGACCACCCGATGCACCGGCTGCTCCAGGGAGAAGTCGGCAGCGGCAAGACCATGGTCGCCCTGCGCGCCATGCTC
GCCGTCGTCGACGCGGGCGGGCAGGCCGTGATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGGTCGGTCGT
CGAGATGATGGGCGAGCTGGCCGAGGGAGGCATGCTGGGCGGCGCCGAGCACGCCACCAAGGTGGTGCTGCTCACCGGCT
CCATGGGTGCCGCCGCCCGCCGGGCCGCCCTGCTCGACCTCGCGACCGGCGAGGCGGGCATCGTCATCGGCACGCACGCG
CTGATCGAGGACAAGGTGCAGTTCCACGACCTCGGGCTGGTCGTCGTCGACGAGCAGCACCGGTTCGGCGTCGAGCAGCG
CGACGCCCTGCGCGGCAAGGGGAAGCAACCGCCGCACCTGCTCGTGATGACCGCCACCCCCATCCCGCGCACCGTCGCGA
TGACCGTCTTCGGAGACCTGGAGACCTCGGTCCTGGACCAGCTCCCGGCCGGCCGGTCCCCGATCGCCAGCCATGTCGTC
CCGGCCGCCGACAAGCCCCACTTCCTCTCCCGGGCCTGGGAGCGGGTCCGGGAGGAGGTGTCCAACGGCCATCAGGCGTA
CGTCGTCTGCCCGCGCATCGGCGACGAGGCGGACGACCCGGGCCGGAAGGGCGGCGCAGGCAAGGCGTCGCCCGAGGACG
ACGCCGAGAAGCGGCCTCCGCTCGCCGTCCTCGACGTCGCCGGACAGCTGGCGAAGGGCCCCCTGGAAGGGCTCAAGGTC
GAGATCCTGCACGGCCGCATGCCGCCCGACGACAAGGACGCCGTCATGCGCCGCTTCGCGGCCGGCGAGACCGACGTCCT
GGTCGCCACCACCGTCATCGAGGTCGGCGTCAACGTCCCGAACGCCACCGCCATGGTGATCATGGACGCGGACCGCTTCG
GCGTCTCCCAGCTGCACCAGCTGCGCGGCCGGGTCGGTCGCGGCTCCGCCGCCGGGCTGTGCCTGCTGGTCACCGAGATG
CCCGAGGCGAGCGCGGCCCGGCAGCGGCTGAACGCGGTCGCCGGCACCCTCGACGGCTTCGAGCTCTCCCGCATCGACCT
GGAACAGCGCCGGGAGGGCGACGTCCTCGGCCAGGCACAGTCCGGCGCCCGCACCTCCCTGCGCGTCCTCGCCGTCATCG
AGGACGAGGAGATCATCGCGGAGGCGCGGCAGGAGGCCGCGGCACTGGTGGCCGCCGACCCGGAGCTGACCGGCGTGCCC
GGATTGCGAACGGCGCTGGAGGCCCTCCTGGACGAGCAGCGGGAGCAGTACCTGGAAAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(300-452)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(656-717)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

Helicase conserved C-terminal domain (Helicase_C)

(556-628)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

37.872

95.142

0.36