Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OPM66_RS16685 Genome accession   NZ_CP112860
Coordinates   3517151..3517678 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain EAB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3512151..3522678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPM66_RS16665 - 3512335..3513210 (-) 876 WP_000218802.1 hypothetical protein -
  OPM66_RS16670 aroB 3513226..3514308 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  OPM66_RS16675 aroK 3514337..3514906 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OPM66_RS16680 pilQ 3514918..3517083 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OPM66_RS16685 pilP 3517151..3517678 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OPM66_RS16690 pilO 3517689..3518429 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OPM66_RS16695 pilN 3518426..3519067 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  OPM66_RS16700 pilM 3519067..3520125 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=758423 OPM66_RS16685 WP_000695065.1 3517151..3517678(-) (pilP) [Acinetobacter baumannii strain EAB2]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=758423 OPM66_RS16685 WP_000695065.1 3517151..3517678(-) (pilP) [Acinetobacter baumannii strain EAB2]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714