Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LDO09_RS02960 Genome accession   NZ_AP024926
Coordinates   532610..533881 (-) Length   423 a.a.
NCBI ID   WP_011228013.1    Uniprot ID   Q5SKV2
Organism   Thermus thermophilus strain AA1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 527610..538881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO09_RS02940 (TthAA11_05690) sucD 528492..529358 (-) 867 WP_143584872.1 succinate--CoA ligase subunit alpha -
  LDO09_RS02945 (TthAA11_05700) sucC 529355..530530 (-) 1176 WP_143584874.1 ADP-forming succinate--CoA ligase subunit beta -
  LDO09_RS02950 (TthAA11_05710) - 530575..531609 (+) 1035 WP_143584876.1 bis-aminopropyl spermidine synthase family protein -
  LDO09_RS02955 (TthAA11_05720) - 531603..532613 (-) 1011 WP_143584877.1 PIN domain-containing protein -
  LDO09_RS02960 (TthAA11_05730) radA 532610..533881 (-) 1272 WP_011228013.1 DNA repair protein RadA Machinery gene
  LDO09_RS02965 (TthAA11_05740) clpC 533892..536102 (-) 2211 WP_011172629.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  LDO09_RS02970 (TthAA11_05750) - 536231..537751 (+) 1521 WP_143584879.1 glycine--tRNA ligase -
  LDO09_RS02975 (TthAA11_05760) - 537965..538159 (+) 195 WP_051105271.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 44999.12 Da        Isoelectric Point: 7.1985

>NTDB_id=75841 LDO09_RS02960 WP_011228013.1 532610..533881(-) (radA) [Thermus thermophilus strain AA1-1]
MAKATYACVECGYRTPKPLGRCPSCGSWESFQEVAPAPASRRAKPSPLPLLALSQVDEAEERRFSSGLSEVDRVLGGGFV
TGEVVLLGGEPGVGKSTLLLEMAKRMPQRVYYVAGEESPAQIKLRAQRLGVKDLLLVRETRLEPLLALLEEDPPEVLFVD
SVQTLEAGGSPGSLVAVREATSALVRFAKERGVAVVLVGHVTKEGVVAGPKSVEHAVDATLYLETAGPYRVLRSAKNRFG
PVGEIGVFRMEEAGLLEVENPSEAFLKERPLGVPGSAVALALAGERALALEVQALAAKTPFPAPRRVVQGLDGRRVDVVL
AVLERRLGLPLANLDVYVNLAGGLKVQDPGLDLAVALAVYSAVVGRPLPADLALVGEVGLAGEVRRVAGLERRLREGERA
GFGRFLHPGNLKRLQEAVEAYLA

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=75841 LDO09_RS02960 WP_011228013.1 532610..533881(-) (radA) [Thermus thermophilus strain AA1-1]
ATGGCCAAGGCCACCTACGCCTGCGTGGAGTGCGGCTACCGCACCCCCAAGCCCTTGGGGCGGTGCCCCTCCTGCGGTTC
CTGGGAGAGCTTCCAGGAGGTGGCCCCCGCCCCGGCCTCGAGGCGGGCCAAGCCCTCCCCCCTCCCCCTCCTCGCCCTCT
CCCAGGTGGACGAGGCCGAGGAGCGCCGCTTCTCCTCGGGGCTTTCCGAGGTGGACCGGGTCCTGGGCGGGGGGTTTGTG
ACGGGGGAGGTGGTCCTATTGGGAGGGGAGCCCGGGGTGGGCAAGAGCACCCTCCTCCTGGAGATGGCCAAGCGGATGCC
CCAAAGGGTCTACTACGTGGCCGGGGAGGAGTCCCCCGCCCAGATCAAGCTCCGGGCGCAGCGCCTCGGGGTGAAGGACC
TCCTCCTCGTGCGGGAGACCCGCCTCGAGCCCCTCCTCGCCCTCCTGGAGGAGGACCCCCCGGAGGTCCTCTTCGTGGAC
TCCGTGCAGACCCTCGAGGCCGGGGGGAGCCCGGGGAGCTTGGTGGCCGTCCGGGAGGCGACCTCGGCCCTGGTGCGCTT
CGCCAAGGAGCGGGGCGTGGCCGTGGTCCTCGTGGGCCACGTGACCAAGGAGGGGGTGGTGGCCGGCCCCAAGAGCGTGG
AGCACGCCGTGGACGCCACCCTCTACCTGGAGACCGCAGGGCCCTACCGGGTCCTGCGGAGCGCCAAGAACCGCTTCGGC
CCCGTGGGGGAGATCGGGGTCTTCCGCATGGAGGAGGCGGGGCTTCTGGAGGTGGAGAACCCCTCCGAGGCCTTCCTCAA
GGAGCGCCCCCTGGGGGTGCCGGGAAGCGCCGTGGCCCTGGCTCTGGCCGGGGAGCGGGCCTTGGCCCTGGAGGTCCAGG
CCCTGGCGGCCAAAACCCCCTTCCCCGCCCCCCGCAGGGTGGTCCAGGGGCTGGACGGAAGGCGCGTGGACGTGGTCCTC
GCGGTCCTGGAGCGGAGGCTCGGCCTGCCCCTCGCCAACCTGGACGTCTACGTGAACCTCGCCGGGGGGCTCAAGGTCCA
GGACCCGGGGCTGGACCTGGCCGTGGCCCTGGCGGTGTACTCCGCCGTGGTGGGCCGCCCCCTGCCCGCCGACCTCGCCC
TGGTGGGGGAGGTGGGCCTGGCCGGGGAGGTGCGGCGGGTGGCGGGGCTGGAGCGGAGGCTTAGGGAGGGGGAGCGGGCG
GGGTTTGGCCGCTTCCTCCACCCGGGGAACCTTAAGCGCCTTCAGGAGGCTGTGGAGGCGTACCTGGCATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(63-205)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(6-33)

Subunit ChlI of Mg-chelatase (ChlI)

(327-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5H45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

44.893

99.527

0.447
  radA Streptococcus pneumoniae Rx1

44.893

99.527

0.447
  radA Streptococcus pneumoniae D39

44.893

99.527

0.447
  radA Streptococcus pneumoniae TIGR4

44.893

99.527

0.447
  radA Streptococcus mitis SK321

44.893

99.527

0.447
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.953

100

0.447
  radA Streptococcus mitis NCTC 12261

44.656

99.527

0.444

Multiple sequence alignment