Detailed information NTG0758382

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJB09_RS10185
• Genome accession: NZ_CP124517
• Coordinates: 2025620..2026612 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0343
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2020620..2031612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJB09_RS10165 (QJB09_10165)	ygbM	2021258..2022034 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJB09_RS10170 (QJB09_10170)	ygbN	2022123..2023487 (+)	1365	WP_000104433.1	GntP family transporter	-
QJB09_RS10175 (QJB09_10175)	-	2023630..2024673 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJB09_RS10180 (QJB09_10180)	-	2024898..2025449 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJB09_RS10185 (QJB09_10185)	rpoS	2025620..2026612 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJB09_RS10190 (QJB09_10190)	nlpD	2026675..2027769 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJB09_RS10195 (QJB09_10195)	pcm	2027954..2028580 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJB09_RS10200 (QJB09_10200)	surE	2028574..2029335 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJB09_RS10205 (QJB09_10205)	truD	2029316..2030365 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJB09_RS10210 (QJB09_10210)	ispF	2030362..2030841 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJB09_RS10215 (QJB09_10215)	ispD	2030841..2031551 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=758382 QJB09_RS10185 WP_000081550.1 2025620..2026612(-) (rpoS) [Escherichia coli strain AVS0343]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=758382 QJB09_RS10185 WP_000081550.1 2025620..2026612(-) (rpoS) [Escherichia coli strain AVS0343]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715