Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OPM65_RS16410 Genome accession   NZ_CP112859
Coordinates   3466085..3466903 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain EAB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3461085..3471903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPM65_RS16395 (OPM65_16395) pilE 3461302..3461727 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OPM65_RS16400 (OPM65_16400) pilY2 3461724..3462206 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  OPM65_RS16405 (OPM65_16405) pilY1 3462219..3466073 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  OPM65_RS16410 (OPM65_16410) pilX 3466085..3466903 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OPM65_RS16415 (OPM65_16415) pilW 3466900..3467901 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  OPM65_RS16420 (OPM65_16420) pilV 3467902..3468462 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  OPM65_RS16425 (OPM65_16425) fimU 3468456..3468929 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OPM65_RS16430 (OPM65_16430) ispH 3469099..3470049 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OPM65_RS16435 (OPM65_16435) gmk 3470172..3470801 (+) 630 WP_000015937.1 guanylate kinase -
  OPM65_RS16440 (OPM65_16440) rpoZ 3470874..3471152 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OPM65_RS16445 (OPM65_16445) - 3471191..3471320 (+) 130 Protein_3203 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=758370 OPM65_RS16410 WP_000149374.1 3466085..3466903(-) (pilX) [Acinetobacter baumannii strain EAB1]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=758370 OPM65_RS16410 WP_000149374.1 3466085..3466903(-) (pilX) [Acinetobacter baumannii strain EAB1]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993