Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H7Q98_RS13940 Genome accession   NZ_AP021914
Coordinates   2888733..2889362 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WP2-W18-CRE-03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2883733..2894362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7Q98_RS13925 (WP2W18C03_27140) helD 2883975..2886029 (-) 2055 WP_000420533.1 DNA helicase IV -
  H7Q98_RS13930 (WP2W18C03_27150) yccF 2886152..2886598 (+) 447 WP_124783512.1 YccF domain-containing protein -
  H7Q98_RS13935 (WP2W18C03_27160) yccS 2886608..2888770 (+) 2163 WP_000875020.1 YccS family putative transporter -
  H7Q98_RS13940 (WP2W18C03_27170) sxy/tfoX 2888733..2889362 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H7Q98_RS13945 (WP2W18C03_27180) sulA 2889581..2890090 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H7Q98_RS13950 (WP2W18C03_27190) ompA 2890447..2891487 (+) 1041 WP_000750416.1 porin OmpA -
  H7Q98_RS13955 (WP2W18C03_27200) matP 2891563..2892015 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H7Q98_RS13960 (WP2W18C03_27210) ycbZ 2892201..2893961 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=75822 H7Q98_RS13940 WP_000839153.1 2888733..2889362(-) (sxy/tfoX) [Escherichia coli strain WP2-W18-CRE-03]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=75822 H7Q98_RS13940 WP_000839153.1 2888733..2889362(-) (sxy/tfoX) [Escherichia coli strain WP2-W18-CRE-03]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment