Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QJP59_RS21900 Genome accession   NZ_CP124511
Coordinates   4487485..4487961 (-) Length   158 a.a.
NCBI ID   WP_001610807.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4482485..4492961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP59_RS21875 (QJP59_21875) dsdA 4482681..4484009 (-) 1329 WP_000426446.1 D-serine ammonia-lyase -
  QJP59_RS21880 (QJP59_21880) dsdX 4484027..4485364 (-) 1338 WP_000556035.1 D-serine transporter DsdX -
  QJP59_RS21885 (QJP59_21885) dsdC 4485582..4486517 (+) 936 WP_001296270.1 DNA-binding transcriptional regulator DsdC -
  QJP59_RS21890 (QJP59_21890) - 4486717..4487139 (-) 423 Protein_4285 type IV toxin-antitoxin system YeeU family antitoxin -
  QJP59_RS21895 (QJP59_21895) - 4487201..4487422 (-) 222 WP_000691817.1 DUF987 domain-containing protein -
  QJP59_RS21900 (QJP59_21900) radC 4487485..4487961 (-) 477 WP_001610807.1 RadC family protein Machinery gene
  QJP59_RS21905 (QJP59_21905) - 4487976..4488461 (-) 486 WP_001610806.1 antirestriction protein -
  QJP59_RS21910 (QJP59_21910) - 4488553..4489371 (-) 819 WP_001610805.1 DUF932 domain-containing protein -
  QJP59_RS21915 (QJP59_21915) - 4489699..4492545 (-) 2847 WP_063131951.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17645.27 Da        Isoelectric Point: 7.2020

>NTDB_id=758174 QJP59_RS21900 WP_001610807.1 4487485..4487961(-) (radC) [Escherichia coli strain AVS0501]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLADIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=758174 QJP59_RS21900 WP_001610807.1 4487485..4487961(-) (radC) [Escherichia coli strain AVS0501]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
CGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392