Detailed information NTG0758165

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP59_RS20275
• Genome accession: NZ_CP124511
• Coordinates: 4146588..4147580 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0501
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4141588..4152580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP59_RS20245 (QJP59_20245)	ispD	4141649..4142359 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJP59_RS20250 (QJP59_20250)	ispF	4142359..4142838 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP59_RS20255 (QJP59_20255)	truD	4142835..4143884 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP59_RS20260 (QJP59_20260)	surE	4143865..4144626 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP59_RS20265 (QJP59_20265)	pcm	4144620..4145246 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP59_RS20270 (QJP59_20270)	nlpD	4145431..4146525 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP59_RS20275 (QJP59_20275)	rpoS	4146588..4147580 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP59_RS20280 (QJP59_20280)	-	4147751..4148302 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJP59_RS20285 (QJP59_20285)	-	4148527..4149570 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP59_RS20290 (QJP59_20290)	ygbN	4149713..4151077 (-)	1365	WP_000104433.1	GntP family transporter	-
QJP59_RS20295 (QJP59_20295)	ygbM	4151166..4151942 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=758165 QJP59_RS20275 WP_000081550.1 4146588..4147580(+) (rpoS) [Escherichia coli strain AVS0501]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=758165 QJP59_RS20275 WP_000081550.1 4146588..4147580(+) (rpoS) [Escherichia coli strain AVS0501]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715