Detailed information    

insolico Bioinformatically predicted

Overview


Name   rec2   Type   Machinery gene
Locus tag   ORU25_RS08250 Genome accession   NZ_CP111145
Coordinates   1641526..1643919 (+) Length   797 a.a.
NCBI ID   WP_164905894.1    Uniprot ID   -
Organism   Pasteurella multocida strain PF9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1639198..1699083 1641526..1643919 within 0


Gene organization within MGE regions


Location: 1639198..1699083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORU25_RS08240 (ORU25_08240) pcnB 1639198..1640703 (-) 1506 WP_016533715.1 polynucleotide adenylyltransferase PcnB -
  ORU25_RS08245 (ORU25_08245) dksA 1640792..1641229 (-) 438 WP_005716860.1 RNA polymerase-binding protein DksA -
  ORU25_RS08250 (ORU25_08250) rec2 1641526..1643919 (+) 2394 WP_164905894.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ORU25_RS08255 (ORU25_08255) msbA 1643972..1645720 (+) 1749 WP_078737852.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ORU25_RS08260 (ORU25_08260) lpxK 1645752..1646729 (+) 978 WP_076090531.1 tetraacyldisaccharide 4'-kinase -
  ORU25_RS08265 (ORU25_08265) - 1646741..1646923 (+) 183 WP_076090529.1 Trm112 family protein -
  ORU25_RS08270 (ORU25_08270) kdsB 1646925..1647701 (+) 777 WP_076090527.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ORU25_RS08275 (ORU25_08275) uvrC 1647726..1649561 (+) 1836 WP_078737851.1 excinuclease ABC subunit UvrC -
  ORU25_RS08280 (ORU25_08280) pgsA 1649657..1650214 (+) 558 WP_005751628.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ORU25_RS08295 (ORU25_08295) - 1651736..1653337 (-) 1602 WP_266200009.1 hypothetical protein -
  ORU25_RS08300 (ORU25_08300) - 1653334..1653906 (-) 573 WP_071523714.1 hypothetical protein -
  ORU25_RS08305 (ORU25_08305) - 1653893..1654657 (-) 765 WP_016533395.1 hypothetical protein -
  ORU25_RS08310 (ORU25_08310) - 1654668..1657523 (-) 2856 WP_266200008.1 phage tail protein -
  ORU25_RS08315 (ORU25_08315) - 1657561..1658154 (-) 594 WP_230491938.1 phage tail protein -
  ORU25_RS08320 (ORU25_08320) - 1658154..1659320 (-) 1167 WP_016533249.1 baseplate J/gp47 family protein -
  ORU25_RS08325 (ORU25_08325) - 1659313..1659651 (-) 339 WP_005725175.1 DUF2590 family protein -
  ORU25_RS08330 (ORU25_08330) - 1659655..1661778 (-) 2124 WP_016533248.1 phage tail tape measure protein -
  ORU25_RS12365 - 1661792..1661914 (-) 123 WP_016533247.1 DUF6890 family protein -
  ORU25_RS08335 (ORU25_08335) - 1661971..1662279 (-) 309 WP_015981998.1 putative phage tail assembly chaperone -
  ORU25_RS12370 lysC 1662286..1662519 (-) 234 WP_373364476.1 Rz1-like lysis system protein LysC -
  ORU25_RS08340 (ORU25_08340) - 1662413..1662799 (-) 387 WP_016533246.1 hypothetical protein -
  ORU25_RS08345 (ORU25_08345) - 1662796..1663347 (-) 552 WP_015981996.1 lysozyme -
  ORU25_RS08350 (ORU25_08350) - 1663334..1663546 (-) 213 WP_016533245.1 phage holin -
  ORU25_RS08355 (ORU25_08355) - 1663626..1664078 (-) 453 WP_016533244.1 DUF2597 family protein -
  ORU25_RS08360 (ORU25_08360) - 1664083..1665213 (-) 1131 WP_016533243.1 DUF2586 domain-containing protein -
  ORU25_RS08365 (ORU25_08365) - 1665232..1665921 (-) 690 WP_016570162.1 hypothetical protein -
  ORU25_RS08370 (ORU25_08370) - 1665918..1666451 (-) 534 WP_016533337.1 phage tail protein -
  ORU25_RS08375 (ORU25_08375) - 1666448..1666900 (-) 453 WP_016533336.1 head completion/stabilization protein -
  ORU25_RS08380 (ORU25_08380) - 1666873..1667745 (-) 873 WP_266200006.1 terminase endonuclease subunit -
  ORU25_RS08385 (ORU25_08385) - 1667752..1668780 (-) 1029 WP_016533334.1 phage major capsid protein, P2 family -
  ORU25_RS08390 (ORU25_08390) - 1668785..1669669 (-) 885 WP_016533333.1 GPO family capsid scaffolding protein -
  ORU25_RS08395 (ORU25_08395) - 1669874..1671682 (+) 1809 WP_266200005.1 terminase ATPase subunit family protein -
  ORU25_RS08400 (ORU25_08400) - 1671687..1672727 (+) 1041 WP_016570163.1 phage portal protein -
  ORU25_RS08405 (ORU25_08405) - 1672794..1673069 (+) 276 WP_005725620.1 ogr/Delta-like zinc finger family protein -
  ORU25_RS08410 (ORU25_08410) - 1673166..1673702 (-) 537 WP_016533342.1 phage N-6-adenine-methyltransferase -
  ORU25_RS08415 (ORU25_08415) - 1673671..1673937 (-) 267 WP_266200004.1 hypothetical protein -
  ORU25_RS08420 (ORU25_08420) - 1673940..1674191 (-) 252 WP_016533340.1 hypothetical protein -
  ORU25_RS08425 (ORU25_08425) - 1674205..1676598 (-) 2394 WP_266200003.1 replication endonuclease -
  ORU25_RS08430 (ORU25_08430) - 1676628..1676897 (-) 270 WP_005725397.1 hypothetical protein -
  ORU25_RS08435 (ORU25_08435) - 1676903..1677154 (-) 252 WP_016570164.1 hypothetical protein -
  ORU25_RS08440 (ORU25_08440) - 1677169..1677378 (-) 210 WP_078801978.1 hypothetical protein -
  ORU25_RS08445 (ORU25_08445) - 1677359..1677694 (-) 336 WP_078801977.1 hypothetical protein -
  ORU25_RS08450 (ORU25_08450) - 1677687..1677869 (-) 183 WP_016533510.1 hypothetical protein -
  ORU25_RS08455 (ORU25_08455) - 1677948..1678190 (+) 243 WP_016533509.1 hypothetical protein -
  ORU25_RS08460 (ORU25_08460) - 1678262..1678474 (-) 213 WP_078801976.1 hypothetical protein -
  ORU25_RS08465 (ORU25_08465) - 1678591..1679166 (+) 576 WP_015981971.1 phage repressor protein CI -
  ORU25_RS08470 (ORU25_08470) - 1679166..1679618 (+) 453 WP_078801975.1 hypothetical protein -
  ORU25_RS08475 (ORU25_08475) - 1679621..1680643 (+) 1023 WP_015981969.1 site-specific integrase -
  ORU25_RS08480 (ORU25_08480) - 1681808..1682032 (+) 225 WP_010906888.1 Flp family type IVb pilin -
  ORU25_RS08485 (ORU25_08485) - 1682133..1682315 (+) 183 WP_076090523.1 Flp family type IVb pilin -
  ORU25_RS08490 (ORU25_08490) - 1682380..1682772 (+) 393 WP_076090521.1 prepilin peptidase -
  ORU25_RS08495 (ORU25_08495) - 1682815..1683627 (+) 813 WP_010906886.1 SAF domain-containing protein -
  ORU25_RS08500 (ORU25_08500) - 1683624..1685036 (+) 1413 WP_076090519.1 type II and III secretion system protein family protein -
  ORU25_RS08505 (ORU25_08505) - 1685033..1685536 (+) 504 WP_076090517.1 protein RcpB -
  ORU25_RS08510 (ORU25_08510) - 1685553..1686674 (+) 1122 WP_010906883.1 CpaE family protein -
  ORU25_RS08515 (ORU25_08515) - 1686694..1687971 (+) 1278 WP_010906882.1 CpaF family protein -
  ORU25_RS08520 (ORU25_08520) - 1687972..1688856 (+) 885 WP_041422604.1 type II secretion system F family protein -
  ORU25_RS08525 (ORU25_08525) - 1688853..1689707 (+) 855 WP_010906880.1 type II secretion system F family protein -
  ORU25_RS08530 (ORU25_08530) - 1689697..1690470 (+) 774 WP_010906879.1 tetratricopeptide repeat protein -
  ORU25_RS08535 (ORU25_08535) - 1690486..1691073 (+) 588 WP_010906878.1 TadE/TadG family type IV pilus assembly protein -
  ORU25_RS08540 (ORU25_08540) tadF 1691102..1691665 (+) 564 WP_010906877.1 tight adherence pilus pseudopilin TadF -
  ORU25_RS08545 (ORU25_08545) - 1691685..1693451 (+) 1767 WP_076090515.1 TadE/TadG family type IV pilus assembly protein -
  ORU25_RS08550 (ORU25_08550) - 1693661..1694029 (-) 369 WP_076090513.1 SirB2 family protein -
  ORU25_RS08555 (ORU25_08555) gyrA 1694105..1696786 (-) 2682 WP_128597159.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  ORU25_RS08560 (ORU25_08560) ubiG 1696939..1697667 (+) 729 WP_076090509.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  ORU25_RS08565 (ORU25_08565) aroA 1697761..1699083 (-) 1323 WP_076090506.1 3-phosphoshikimate 1-carboxyvinyltransferase -

Sequence


Protein


Download         Length: 797 a.a.        Molecular weight: 91190.58 Da        Isoelectric Point: 9.8258

>NTDB_id=758165 ORU25_RS08250 WP_164905894.1 1641526..1643919(+) (rec2) [Pasteurella multocida strain PF9]
MKNALLSMSVVTVFSACSLLWLPEHFLLHWHITLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVVQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTDIWQTYQKTSTAHVIAI
SGLHIGLAMGIGYFFIRLIQFLLPLKWVTPTLPIIVGLLFAWFYAELAGFSIPTSRAFFALTVVSWVKLWRRSYSVWQFF
LLVVALLLLGEPCMILSSSFWLSVGAVSVLMLWYQIFPLSLLHWRGKKITERPWRNCRWFFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVFVVPIYSVILIPLILLAVITQGAFSSWSIANTVAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDFKKESLKCYAKVPRFFHLNQMRLLNPSLKWKTYLLAVGISLYCFLQILYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQVKLMTASAQNYGKTDRT
FCEAGKTWTWQHLTFKALSPTKIVKRAKNTDSCVLLISDGSHHLLLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=758165 ORU25_RS08250 WP_164905894.1 1641526..1643919(+) (rec2) [Pasteurella multocida strain PF9]
ATGAAAAACGCTCTTTTGTCAATGTCTGTTGTGACCGTATTCAGCGCATGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTTCATTGGCACATAACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTAGGTATTTTAGGCTATATTCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGTTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTACTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCAGCACAATTATCTCCGCAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAGGCACAGATAGGGGAGATTTGGAAAGGAGAGCTACGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCAACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGGCTGTTACTTGCACTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGACATTTGGCAAACTTATCAAAAAACCAGCACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATTCGTTTAATTCAGTTCCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTTGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGCGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGTATGATTTTATCGAGCAGTTTCTGGCTGTCGGTTGGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGCGTCCTT
GGCGCAACTGTCGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGTTTGTGGTGCCTATTTATAGTGTGATTTTAATACCATT
GATTTTATTGGCGGTGATCACTCAAGGGGCATTTTCCTCTTGGTCTATTGCAAATACTGTTGCGAAATACGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATCTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTTAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGAGGCTGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGGCATCAGTCTTTACTGTT
TCTTACAGATACTTTATAAGGAGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGTGAAGCTGATGACGGCGTCTGCTCAAAATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATCTCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACGTCAACAGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCACTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAAATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.003

100

0.511