Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   F7G76_RS22880 Genome accession   NZ_AP024924
Coordinates   4578715..4579707 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli O145:H28 strain 16003     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4573715..4584707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7G76_RS22855 (EC16003_4406) rbsD 4573839..4574258 (+) 420 WP_000715936.1 D-ribose pyranase -
  F7G76_RS22860 (EC16003_4407) rbsA 4574266..4575771 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  F7G76_RS22865 (EC16003_4408) rbsC 4575776..4576741 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  F7G76_RS22870 (EC16003_4409) rbsB 4576766..4577656 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  F7G76_RS22875 (EC16003_4410) rbsK 4577782..4578711 (+) 930 WP_024221644.1 ribokinase -
  F7G76_RS22880 (EC16003_4411) cytR 4578715..4579707 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  F7G76_RS22885 (EC16003_4412) mdtD 4579685..4581100 (-) 1416 WP_001280851.1 multidrug transporter subunit MdtD -
  F7G76_RS22890 (EC16003_4413) yieP 4581123..4581815 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=75806 F7G76_RS22880 WP_000224470.1 4578715..4579707(+) (cytR) [Escherichia coli O145:H28 strain 16003]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=75806 F7G76_RS22880 WP_000224470.1 4578715..4579707(+) (cytR) [Escherichia coli O145:H28 strain 16003]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACTAATCCTTTCTATTCAGAACTGGTGCGCGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAGCGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTTATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment