Detailed information NTG0758030

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJB02_RS05655
• Genome accession: NZ_CP124508
• Coordinates: 1180091..1181083 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0068
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1175091..1186083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJB02_RS05625 (QJB02_05625)	ispD	1175152..1175862 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJB02_RS05630 (QJB02_05630)	ispF	1175862..1176341 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJB02_RS05635 (QJB02_05635)	truD	1176338..1177387 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJB02_RS05640 (QJB02_05640)	surE	1177368..1178129 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJB02_RS05645 (QJB02_05645)	pcm	1178123..1178749 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJB02_RS05650 (QJB02_05650)	nlpD	1178934..1180028 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJB02_RS05655 (QJB02_05655)	rpoS	1180091..1181083 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJB02_RS05660 (QJB02_05660)	-	1181254..1181805 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJB02_RS05665 (QJB02_05665)	-	1182030..1183073 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJB02_RS05670 (QJB02_05670)	ygbN	1183216..1184580 (-)	1365	WP_000104433.1	GntP family transporter	-
QJB02_RS05675 (QJB02_05675)	ygbM	1184669..1185445 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=758030 QJB02_RS05655 WP_000081550.1 1180091..1181083(+) (rpoS) [Escherichia coli strain AVS0068]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=758030 QJB02_RS05655 WP_000081550.1 1180091..1181083(+) (rpoS) [Escherichia coli strain AVS0068]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715