Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ODZ84_RS11130 Genome accession   NZ_CP111121
Coordinates   2440009..2441361 (+) Length   450 a.a.
NCBI ID   WP_266177171.1    Uniprot ID   -
Organism   Chryseobacterium fluminis strain MMS21-Ot14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2435009..2446361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODZ84_RS11105 (ODZ84_11105) - 2436052..2437659 (-) 1608 WP_266177164.1 CTP synthase -
  ODZ84_RS11110 (ODZ84_11110) - 2437764..2438321 (+) 558 WP_266177166.1 hypothetical protein -
  ODZ84_RS11115 (ODZ84_11115) - 2438308..2438835 (+) 528 WP_266177168.1 hypothetical protein -
  ODZ84_RS11120 (ODZ84_11120) - 2438900..2439469 (-) 570 WP_266177169.1 YceI family protein -
  ODZ84_RS11125 (ODZ84_11125) - 2439533..2439949 (-) 417 WP_266177170.1 hypothetical protein -
  ODZ84_RS11130 (ODZ84_11130) radA 2440009..2441361 (+) 1353 WP_266177171.1 DNA repair protein RadA Machinery gene
  ODZ84_RS11135 (ODZ84_11135) - 2441433..2442977 (+) 1545 WP_266177173.1 zinc-dependent metalloprotease -
  ODZ84_RS11140 (ODZ84_11140) - 2443059..2443652 (+) 594 WP_266177174.1 ACP phosphodiesterase -
  ODZ84_RS11145 (ODZ84_11145) - 2443754..2444863 (-) 1110 WP_266177176.1 hypothetical protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49910.38 Da        Isoelectric Point: 6.3231

>NTDB_id=758023 ODZ84_RS11130 WP_266177171.1 2440009..2441361(+) (radA) [Chryseobacterium fluminis strain MMS21-Ot14]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGEWNTLVEEVVEKTNSHTTPPFSKTKQHVINIVEVETNEEPRIKTPSEELNRV
LGGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDVQNPNCFLYTETNLEKILHEAKK
LAPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENSIPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRN
HLFRLLRANKNRFGSTSEIGIYEMIAQGLKEIKNPSEILITKKFEELSGNSVAVTIEGNRPMLLEIQALVSTAVYGTPQR
SSTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRP
IAQAEQRITEAEKLGYEKIFVSNLNKLSKKKFGIIIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=758023 ODZ84_RS11130 WP_266177171.1 2440009..2441361(+) (radA) [Chryseobacterium fluminis strain MMS21-Ot14]
ATGGCAAAATTAAAAACAGCATATTTCTGTCAAAACTGCGGAACACAGTACTCTCAATGGATGGGACAGTGCAAAAACTG
CGGAGAATGGAATACTTTGGTGGAAGAAGTGGTAGAAAAAACCAATTCTCATACAACGCCACCTTTCTCAAAAACAAAAC
AGCACGTCATCAATATTGTTGAGGTTGAAACCAATGAAGAACCGAGAATAAAAACCCCTTCCGAAGAACTAAACCGGGTT
TTGGGCGGAGGAATCGTTTTAGGCTCCGTTACTTTAATCGGAGGCGAGCCCGGAATCGGAAAATCGACTCTGCTTCTTCA
GCTGGCCCTGAAAATGAAGAAAAAAGTATTCTATGTGTCAGGGGAAGAAAGTGCATCTCAGATTAAAATGAGAGCTGACC
GGCTAACGGATGTTCAAAATCCGAACTGCTTCCTTTATACCGAGACCAATCTGGAAAAAATTCTTCATGAAGCTAAAAAA
CTGGCACCAGATTTCGTAATTATAGATTCTATCCAGACGCTGCAGTCTCAATTGATAGAAAGTTCACCAGGCACGGTCTC
TCAAATCCGTGAATGCTCAAATGAGATCATTAAATACGCAAAAGAAAACAGCATTCCTGTCTTTCTGGTAGGTCACATTA
CAAAAGACGGACAGATTGCAGGTCCTAAAGTACTGGAACACATGGTCGATGTGGTTTTAAACTTCGATGGTGACAGAAAT
CATCTTTTCAGATTATTAAGAGCCAATAAAAACCGTTTCGGATCCACCTCCGAAATCGGAATTTATGAAATGATTGCTCA
GGGCCTGAAAGAAATTAAAAACCCTTCCGAAATTTTAATTACCAAAAAGTTCGAAGAGCTTTCCGGAAATTCGGTAGCTG
TAACAATTGAGGGAAACCGGCCGATGCTGCTGGAAATTCAGGCACTGGTAAGTACGGCCGTTTACGGAACTCCCCAGAGA
AGTTCTACCGGCTTCGACTCCAAAAGACTCAATATGCTGCTGGCTGTCCTGGAAAAAAGAGCAGGATTTCAGCTGGGAGC
CAAAGATGTTTTCCTGAATATTACAGGCGGAATAAAAACGGATGATCCTGCCTTAGATCTCGCTGTCGTTGCTTCTATTC
TTTCATCCAATGAAGATATCGCCATTTCTGAACATTACTGTTTTGCCGGAGAAATCGGACTAAGCGGTGAAATCCGGCCG
ATCGCACAAGCCGAACAGAGAATAACGGAAGCCGAAAAATTAGGATATGAGAAAATTTTTGTGTCTAACTTAAATAAACT
TTCCAAGAAAAAATTCGGAATTATTATAGAAGAAGTCAGTAAAATAGAGGATTTTCACGAAAGACTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(339-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.886

97.556

0.487
  radA Streptococcus pneumoniae Rx1

49.882

94

0.469
  radA Streptococcus pneumoniae D39

49.882

94

0.469
  radA Streptococcus pneumoniae R6

49.882

94

0.469
  radA Streptococcus pneumoniae TIGR4

49.882

94

0.469
  radA Streptococcus mitis SK321

49.882

94

0.469
  radA Streptococcus mitis NCTC 12261

49.882

94

0.469