Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OQV00_RS17260 Genome accession   NZ_CP111115
Coordinates   3616535..3617158 (-) Length   207 a.a.
NCBI ID   WP_004860161.1    Uniprot ID   A0AAP1QFX2
Organism   Raoultella sp. DY2415     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3611535..3622158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQV00_RS17245 helD 3611771..3613825 (-) 2055 WP_127673270.1 DNA helicase IV -
  OQV00_RS17250 - 3613948..3614394 (+) 447 WP_004860167.1 YccF domain-containing protein -
  OQV00_RS17255 yccS 3614412..3616547 (+) 2136 WP_266279089.1 YccS family putative transporter -
  OQV00_RS17260 sxy/tfoX 3616535..3617158 (-) 624 WP_004860161.1 TfoX/Sxy family DNA transformation protein Regulator
  OQV00_RS17265 sulA 3617620..3618129 (+) 510 WP_004860159.1 SOS-induced cell division inhibitor SulA -
  OQV00_RS17270 ompA 3618482..3619552 (+) 1071 WP_004860157.1 porin OmpA -
  OQV00_RS17275 matP 3619661..3620113 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  OQV00_RS17280 - 3620299..3622056 (+) 1758 WP_004860153.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23307.87 Da        Isoelectric Point: 9.5421

>NTDB_id=757979 OQV00_RS17260 WP_004860161.1 3616535..3617158(-) (sxy/tfoX) [Raoultella sp. DY2415]
MKKISSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKHRQRASGRLKDLPNISFHMELLLINAGVSDENMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWADSQHKSIDAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=757979 OQV00_RS17260 WP_004860161.1 3616535..3617158(-) (sxy/tfoX) [Raoultella sp. DY2415]
ATGAAGAAAATTTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGGGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTTGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCTACCCCTCTTTTGACGATGCGGAAAAATGGTCGCCCGGTATTACTGAAA
TATTATCAGGTTGACGAGACTCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
TAATGAAAAGCACCGACAGCGCGCGTCCGGAAGATTAAAAGATCTCCCGAACATCAGTTTTCACATGGAGCTGCTGTTGA
TTAACGCGGGCGTGAGCGATGAAAACATGCTCCGTCAGTTTGGTGCAGAGAAAGTCTGGCTGAAATTGCGCGAGTCAAAT
AAAGCCCTCACCCTGAATGTTCTCTATGCGCTGGAAGGCGCGATTGCCGGCGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTTTGGGCCGACAGCCAGCACAAGAGTATCGATGCTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.792

95.169

0.502