Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QJP73_RS20640 Genome accession   NZ_CP124502
Coordinates   4266977..4268173 (+) Length   398 a.a.
NCBI ID   WP_001161853.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0970     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4261977..4273173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP73_RS20625 (QJP73_20625) - 4262492..4264168 (+) 1677 WP_001546114.1 polysaccharide biosynthesis/export family protein -
  QJP73_RS20630 (QJP73_20630) kdsB 4264178..4264918 (+) 741 WP_000030748.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QJP73_RS20635 (QJP73_20635) - 4264915..4266942 (+) 2028 WP_001546115.1 capsular polysaccharide biosynthesis protein -
  QJP73_RS20640 (QJP73_20640) kpsS 4266977..4268173 (+) 1197 WP_001161853.1 capsular biosynthesis protein Regulator
  QJP73_RS20645 (QJP73_20645) - 4268373..4269509 (-) 1137 WP_000115757.1 hypothetical protein -
  QJP73_RS20650 (QJP73_20650) - 4269526..4270899 (-) 1374 WP_001546116.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 47279.63 Da        Isoelectric Point: 10.0630

>NTDB_id=757901 QJP73_RS20640 WP_001161853.1 4266977..4268173(+) (kpsS) [Escherichia coli strain AVS0970]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLTPSTM
KRIGHAMWYYLIGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGGRCFTITL

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=757901 QJP73_RS20640 WP_001161853.1 4266977..4268173(+) (kpsS) [Escherichia coli strain AVS0970]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTCGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACATTATCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGTATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCATGTTGAGAACTTAACACCTTCAACAATG
AAACGTATTGGCCATGCGATGTGGTATTACCTGATAGGCTGGCATTACCGTCATGAGTTTCCTCGCTATCGCCATCACAA
ATCATTTTCTCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTACGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTTAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGGTAGATGTTTTACCATAACATTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

97.739

0.392