Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ORM95_RS11845 Genome accession   NZ_CP111101
Coordinates   2102222..2102851 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli strain FRIK1989     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2091144..2114025 2102222..2102851 within 0


Gene organization within MGE regions


Location: 2091144..2114025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORM95_RS11785 (ORM95_11710) - 2091144..2092163 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  ORM95_RS11790 (ORM95_11715) yccA 2092571..2093230 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  ORM95_RS11795 (ORM95_11720) tusE 2093321..2093650 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  ORM95_RS11800 (ORM95_11725) yccX 2093647..2093925 (-) 279 WP_000048252.1 acylphosphatase -
  ORM95_RS11805 (ORM95_11730) rlmI 2094020..2095210 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  ORM95_RS11810 (ORM95_11735) hspQ 2095268..2095585 (+) 318 WP_001295356.1 heat shock protein HspQ -
  ORM95_RS11815 (ORM95_11740) yccU 2095630..2096043 (-) 414 WP_000665217.1 CoA-binding protein -
  ORM95_RS11820 (ORM95_11745) csgI 2096216..2096878 (+) 663 WP_000847791.1 DUF2057 family protein -
  ORM95_RS11825 (ORM95_11750) mgsA 2096974..2097432 (+) 459 WP_000424181.1 methylglyoxal synthase -
  ORM95_RS11830 (ORM95_11755) helD 2097464..2099518 (-) 2055 WP_001301436.1 DNA helicase IV -
  ORM95_RS11835 (ORM95_11760) yccF 2099641..2100087 (+) 447 WP_001261230.1 YccF domain-containing protein -
  ORM95_RS11840 (ORM95_11765) yccS 2100097..2102259 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ORM95_RS11845 (ORM95_11770) sxy/tfoX 2102222..2102851 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ORM95_RS11850 (ORM95_11775) sulA 2103070..2103579 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ORM95_RS11855 (ORM95_11780) ompA 2103936..2104976 (+) 1041 WP_000750416.1 porin OmpA -
  ORM95_RS11860 (ORM95_11785) matP 2105052..2105504 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ORM95_RS11865 (ORM95_11790) ycbZ 2105690..2107450 (+) 1761 WP_000156526.1 AAA family ATPase -
  ORM95_RS11870 (ORM95_11795) fabA 2107519..2108037 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  ORM95_RS11875 (ORM95_11800) rmf 2108107..2108274 (-) 168 WP_000828648.1 ribosome modulation factor -
  ORM95_RS11880 (ORM95_11805) pqiC 2108530..2109093 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  ORM95_RS11885 (ORM95_11810) pqiB 2109090..2110730 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  ORM95_RS11890 (ORM95_11815) pqiA 2110735..2111988 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  ORM95_RS11895 (ORM95_11820) uup 2112118..2114025 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=757876 ORM95_RS11845 WP_000839159.1 2102222..2102851(-) (sxy/tfoX) [Escherichia coli strain FRIK1989]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=757876 ORM95_RS11845 WP_000839159.1 2102222..2102851(-) (sxy/tfoX) [Escherichia coli strain FRIK1989]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995