Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ORM94_RS08700 Genome accession   NZ_CP111095
Coordinates   1549570..1550199 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli strain TW14588     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1538492..1561373 1549570..1550199 within 0


Gene organization within MGE regions


Location: 1538492..1561373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORM94_RS08640 (ORM94_08600) - 1538492..1539511 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  ORM94_RS08645 (ORM94_08605) yccA 1539919..1540578 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  ORM94_RS08650 (ORM94_08610) tusE 1540669..1540998 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  ORM94_RS08655 (ORM94_08615) yccX 1540995..1541273 (-) 279 WP_000048252.1 acylphosphatase -
  ORM94_RS08660 (ORM94_08620) rlmI 1541368..1542558 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  ORM94_RS08665 (ORM94_08625) hspQ 1542616..1542933 (+) 318 WP_001295356.1 heat shock protein HspQ -
  ORM94_RS08670 (ORM94_08630) yccU 1542978..1543391 (-) 414 WP_000665217.1 CoA-binding protein -
  ORM94_RS08675 (ORM94_08635) csgI 1543564..1544226 (+) 663 WP_000847791.1 DUF2057 family protein -
  ORM94_RS08680 (ORM94_08640) mgsA 1544322..1544780 (+) 459 WP_000424181.1 methylglyoxal synthase -
  ORM94_RS08685 (ORM94_08645) helD 1544812..1546866 (-) 2055 WP_001301436.1 DNA helicase IV -
  ORM94_RS08690 (ORM94_08650) yccF 1546989..1547435 (+) 447 WP_001261230.1 YccF domain-containing protein -
  ORM94_RS08695 (ORM94_08655) yccS 1547445..1549607 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ORM94_RS08700 (ORM94_08660) sxy/tfoX 1549570..1550199 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ORM94_RS08705 (ORM94_08665) sulA 1550418..1550927 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ORM94_RS08710 (ORM94_08670) ompA 1551284..1552324 (+) 1041 WP_000750416.1 porin OmpA -
  ORM94_RS08715 (ORM94_08675) matP 1552400..1552852 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ORM94_RS08720 (ORM94_08680) ycbZ 1553038..1554798 (+) 1761 WP_000156526.1 AAA family ATPase -
  ORM94_RS08725 (ORM94_08685) fabA 1554867..1555385 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  ORM94_RS08730 (ORM94_08690) rmf 1555455..1555622 (-) 168 WP_000828648.1 ribosome modulation factor -
  ORM94_RS08735 (ORM94_08695) pqiC 1555878..1556441 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  ORM94_RS08740 (ORM94_08700) pqiB 1556438..1558078 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  ORM94_RS08745 (ORM94_08705) pqiA 1558083..1559336 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  ORM94_RS08750 (ORM94_08710) uup 1559466..1561373 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=757830 ORM94_RS08700 WP_000839159.1 1549570..1550199(-) (sxy/tfoX) [Escherichia coli strain TW14588]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=757830 ORM94_RS08700 WP_000839159.1 1549570..1550199(-) (sxy/tfoX) [Escherichia coli strain TW14588]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995