Detailed information NTG0757768

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJB04_RS05805
• Genome accession: NZ_CP124500
• Coordinates: 1214389..1215381 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0744
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1209389..1220381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJB04_RS05775 (QJB04_05775)	ispD	1209450..1210160 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJB04_RS05780 (QJB04_05780)	ispF	1210160..1210639 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJB04_RS05785 (QJB04_05785)	truD	1210636..1211685 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJB04_RS05790 (QJB04_05790)	surE	1211666..1212427 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJB04_RS05795 (QJB04_05795)	pcm	1212421..1213047 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJB04_RS05800 (QJB04_05800)	nlpD	1213232..1214326 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJB04_RS05805 (QJB04_05805)	rpoS	1214389..1215381 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJB04_RS05810 (QJB04_05810)	-	1215552..1216103 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJB04_RS05815 (QJB04_05815)	-	1216328..1217371 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJB04_RS05820 (QJB04_05820)	ygbN	1217514..1218878 (-)	1365	WP_000104433.1	GntP family transporter	-
QJB04_RS05825 (QJB04_05825)	ygbM	1218967..1219743 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=757768 QJB04_RS05805 WP_000081550.1 1214389..1215381(+) (rpoS) [Escherichia coli strain AVS0744]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=757768 QJB04_RS05805 WP_000081550.1 1214389..1215381(+) (rpoS) [Escherichia coli strain AVS0744]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715