Detailed information NTG0757723

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: OH144_RS17610
• Genome accession: NZ_CP111079
• Coordinates: 4199187..4200566 (-)
• Length: 459 a.a.
• NCBI ID: WP_266203589.1
• Uniprot ID: -
• Organism: Pontibacter kalidii strain XAAS-72
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4194187..4205566

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH144_RS17600	-	4194875..4196056 (-)	1182	WP_266203587.1	hypothetical protein	-
OH144_RS17605	-	4197338..4198756 (-)	1419	WP_266203588.1	TlpA disulfide reductase family protein	-
OH144_RS17610	radA	4199187..4200566 (-)	1380	WP_266203589.1	DNA repair protein RadA	Machinery gene
OH144_RS17615	-	4200641..4203559 (-)	2919	WP_266203590.1	CHASE domain-containing protein	-
OH144_RS17620	-	4203742..4203876 (-)	135	WP_266203591.1	hypothetical protein	-
OH144_RS17625	-	4204049..4204765 (+)	717	WP_266203592.1	hypothetical protein	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 50053.30 Da
• Isoelectric Point: 5.5704

>NTDB_id=757723 OH144_RS17610 WP_266203589.1 4199187..4200566(-) (radA) [Pontibacter kalidii strain XAAS-72]
MAKIKTSYFCQNCGAQSAKWIGKCPACGEWNTYVEEVVQREEVTPTTAWKVGSSTAQVSNKPKPIADISYQEQQRVVTQD
QELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQIALSLQGLKVLYVSGEESEQQIKMRAERLMAQTSDCFILTETGTQNI
FKQVELVRPQVLIIDSIQTLHSSFIEAGAGSVSQVRECTAELLKFAKESGTPVFLIGHITKEGNLAGPKILEHMVDTVLQ
FEGDRHMTYRILRTTKNRFGSTSELGIYEMMGSGLREVSNPSEILISQREDAFSGISIGATLEGNRPLLIEVQSLVSPAT
YGTPQRTSTGFDAKRLNMLLAVLEKRGGYRLGAQDVFLNIAGGLKVEDPALDLAVCASILSSFEDMPISNTACFAAEVGL
GGEVRAVNRVENRITEAEKLGFTDIYISKYNKKGVDLSKFSINVHAYGRLEEVFASLFG

Nucleotide

• Length: 1380 bp

>NTDB_id=757723 OH144_RS17610 WP_266203589.1 4199187..4200566(-) (radA) [Pontibacter kalidii strain XAAS-72]
ATGGCTAAGATAAAGACATCCTACTTCTGCCAGAACTGCGGCGCCCAGTCGGCCAAGTGGATCGGCAAGTGCCCGGCCTG
CGGCGAGTGGAACACTTACGTGGAAGAGGTGGTGCAGCGCGAGGAGGTAACGCCCACCACCGCCTGGAAGGTGGGCAGCA
GCACGGCGCAGGTATCCAACAAGCCCAAGCCCATTGCCGACATCAGCTACCAGGAGCAGCAGCGTGTCGTGACGCAGGAC
CAGGAGCTGAACCGGGTGCTGGGCGGCGGCATTGTGCCGGGCTCTATGGTGCTGATTGGCGGCGAGCCGGGCATCGGTAA
AAGTACGCTGATGCTGCAGATCGCCCTGAGCCTGCAGGGGCTGAAGGTGCTCTACGTGAGCGGCGAGGAGAGCGAGCAGC
AGATAAAAATGCGCGCCGAGCGCCTCATGGCCCAAACCTCCGACTGCTTTATCCTGACCGAGACCGGCACGCAGAACATC
TTTAAGCAAGTGGAACTGGTGCGGCCGCAGGTGCTCATCATCGACTCTATCCAGACCCTCCACTCCTCTTTTATAGAGGC
TGGCGCGGGCAGCGTGAGCCAGGTGCGCGAGTGTACCGCCGAGCTGCTGAAGTTCGCCAAAGAGAGCGGCACGCCCGTTT
TCCTGATCGGCCACATCACCAAAGAGGGCAACCTGGCGGGGCCAAAGATACTGGAGCACATGGTAGACACGGTGCTGCAG
TTCGAAGGCGACCGCCACATGACCTACCGCATCCTGCGCACTACAAAAAATCGCTTTGGCTCCACCTCGGAGCTGGGCAT
CTATGAGATGATGGGCTCCGGGCTGCGGGAGGTGAGCAACCCGTCAGAGATCCTGATCTCGCAGCGCGAGGACGCTTTTA
GCGGCATCAGTATAGGCGCCACGCTGGAGGGCAACCGCCCGCTGCTGATAGAGGTGCAAAGCCTGGTGAGCCCTGCTACC
TATGGCACGCCGCAGCGCACCAGCACCGGCTTCGATGCCAAGCGCCTGAACATGCTGCTGGCCGTGCTGGAGAAGCGCGG
CGGCTACCGCCTCGGCGCCCAGGACGTGTTCCTGAACATTGCCGGCGGCCTGAAAGTGGAAGACCCCGCGCTGGATTTAG
CCGTGTGCGCCTCCATCCTCTCCTCTTTCGAGGACATGCCGATCTCCAACACCGCCTGCTTTGCCGCAGAGGTAGGCTTG
GGCGGCGAGGTGCGCGCCGTAAACCGCGTGGAGAACCGCATCACGGAGGCCGAAAAGCTGGGCTTTACCGATATCTACAT
CTCCAAGTATAACAAGAAAGGCGTGGACCTGAGTAAGTTCTCCATCAACGTGCATGCGTATGGGCGACTGGAGGAGGTGT
TCGCAAGCTTGTTCGGCTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (345-431)

• AAA domain (AAA_25) (75-223)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	51.522	100	0.516
radA	Streptococcus pneumoniae Rx1	51.522	100	0.516
radA	Streptococcus pneumoniae D39	51.522	100	0.516
radA	Streptococcus pneumoniae TIGR4	51.522	100	0.516
radA	Streptococcus mitis NCTC 12261	51.304	100	0.514
radA	Streptococcus mitis SK321	51.087	100	0.512
radA	Bacillus subtilis subsp. subtilis str. 168	52.982	94.989	0.503