Detailed information NTG0757679

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP65_RS05825
• Genome accession: NZ_CP124498
• Coordinates: 1218959..1219951 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0655
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1213959..1224951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP65_RS05795 (QJP65_05795)	ispD	1214020..1214730 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJP65_RS05800 (QJP65_05800)	ispF	1214730..1215209 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP65_RS05805 (QJP65_05805)	truD	1215206..1216255 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP65_RS05810 (QJP65_05810)	surE	1216236..1216997 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP65_RS05815 (QJP65_05815)	pcm	1216991..1217617 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP65_RS05820 (QJP65_05820)	nlpD	1217802..1218896 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP65_RS05825 (QJP65_05825)	rpoS	1218959..1219951 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP65_RS05830 (QJP65_05830)	-	1220122..1220673 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJP65_RS05835 (QJP65_05835)	-	1220898..1221941 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP65_RS05840 (QJP65_05840)	ygbN	1222084..1223448 (-)	1365	WP_000104433.1	GntP family transporter	-
QJP65_RS05845 (QJP65_05845)	ygbM	1223537..1224313 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=757679 QJP65_RS05825 WP_000081550.1 1218959..1219951(+) (rpoS) [Escherichia coli strain AVS0655]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=757679 QJP65_RS05825 WP_000081550.1 1218959..1219951(+) (rpoS) [Escherichia coli strain AVS0655]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715