Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC   Type   Machinery gene
Locus tag   OP701_RS13125 Genome accession   NZ_CP111073
Coordinates   2610204..2612534 (-) Length   776 a.a.
NCBI ID   WP_060400041.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BSXE-2102     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2605204..2617534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OP701_RS13090 (OP701_13090) - 2605544..2605882 (-) 339 WP_060399058.1 YqxA family protein -
  OP701_RS13095 (OP701_13095) spoIIP 2605899..2607104 (-) 1206 WP_003237102.1 spore autolysin SpoIIP -
  OP701_RS13100 (OP701_13100) gpr 2607167..2608273 (-) 1107 WP_003237103.1 GPR endopeptidase -
  OP701_RS13105 (OP701_13105) rpsT 2608476..2608742 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  OP701_RS13110 (OP701_13110) holA 2608757..2609800 (-) 1044 WP_060399059.1 DNA polymerase III subunit delta -
  OP701_RS13115 (OP701_13115) - 2609840..2609989 (-) 150 WP_003229985.1 hypothetical protein -
  OP701_RS13120 (OP701_13120) - 2610030..2610164 (+) 135 WP_003229983.1 YqzM family protein -
  OP701_RS13125 (OP701_13125) comEC 2610204..2612534 (-) 2331 WP_060400041.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OP701_RS13130 (OP701_13130) - 2612538..2613107 (-) 570 WP_003237106.1 ComE operon protein 2 -
  OP701_RS13135 (OP701_13135) comEA 2613174..2613791 (-) 618 WP_060399060.1 helix-hairpin-helix domain-containing protein Machinery gene
  OP701_RS13140 (OP701_13140) comER 2613875..2614696 (+) 822 WP_060399061.1 late competence protein ComER -
  OP701_RS13145 (OP701_13145) - 2614762..2615505 (-) 744 WP_060399062.1 class I SAM-dependent DNA methyltransferase -
  OP701_RS13150 (OP701_13150) rsfS 2615502..2615858 (-) 357 WP_003237112.1 ribosome silencing factor -
  OP701_RS13155 (OP701_13155) yqeK 2615876..2616436 (-) 561 WP_003237115.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OP701_RS13160 (OP701_13160) - 2616426..2616995 (-) 570 WP_019258940.1 nicotinate-nucleotide adenylyltransferase -
  OP701_RS13165 (OP701_13165) yhbY 2617007..2617297 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -

Sequence


Protein


Download         Length: 776 a.a.        Molecular weight: 86623.92 Da        Isoelectric Point: 7.5938

>NTDB_id=757672 OP701_RS13125 WP_060400041.1 2610204..2612534(-) (comEC) [Bacillus inaquosorum strain BSXE-2102]
MRNSRLLLPLAAASATAGITAAAYFSAVFLFFLFLLIIFIKTRHAFLIFVCFFSFILFFALYTVTDSRNVSSYQQGTYKS
KAVIDSIPKIDGDRMSMVIKTPDSEKWAASYRIQSSDEKDQLSYIEPGMSCELTGALEEPKHATVPGTFDYNEYLYRQHI
HWNYSVTSIHNCSEPVNFKDKLLSLRKYIVSFTNSLLPPDSAGIVQALTVGDRFYVEDEVLNAYQKLGVVHLLAISGLHV
GILTAGLFYIMIRLGITREKASLLLLLFLPLYVILTGAAPSVLRAALMSGIYLAGSLVKWRVHSAGAICLSYIVLLLFNP
YHLFEVGFQLSFAVSFSLILSSSIFQQLKTSLGQLTMVSIIAQLGSLPILLYHFQQFSIISIPMNILMVPFYTFCVLPGA
IAGVFLLSLSASAGRFFFCWFDFLMSWTNRLITRIADIDVFTIIIARPAPALLFLFTVTIILLLMAIEKRSFSQLAITGG
LCCAVLCLLLIYPRLSSEGEVDMIDIGQGDSMYVGAPHQQGRVLIDTGGTLSYSSEPWQEKQHPFSLGEKVLMPFLTAKG
IKQLDALILTHADQDHIGEAETLLKHHKVKRLVIPKGFVSEPKDEKVLRAAREEGVTIEEVKRGDVLQIKDLQFQVLSPE
TPDPASKNNSSLVLWMKTGGMSWILTGDLEKEGEQEVMNVFPNIKADVLKVGHHGSKGSTGEEFIKQLQPKTAIISAGEN
NRYHHPHQEVLQILQRHSIRVLRTDQSGTIQYRYKNRVGTFSVYPPYDTSDITETN

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=757672 OP701_RS13125 WP_060400041.1 2610204..2612534(-) (comEC) [Bacillus inaquosorum strain BSXE-2102]
ATGCGTAATTCGCGTTTGTTATTGCCTTTGGCGGCAGCTTCGGCAACGGCTGGAATTACTGCCGCCGCTTATTTCTCCGC
TGTTTTTCTTTTCTTCCTCTTTCTCCTCATCATTTTCATCAAAACGAGACACGCTTTTCTCATTTTTGTTTGTTTCTTCT
CTTTTATATTGTTTTTTGCACTGTATACGGTCACAGATTCCCGGAATGTCTCTTCATATCAGCAGGGCACTTATAAATCC
AAGGCAGTGATTGACAGTATTCCTAAAATTGACGGAGACCGTATGTCTATGGTGATTAAGACACCTGATAGCGAAAAATG
GGCCGCTTCATATCGCATTCAGTCTTCTGATGAAAAAGATCAGCTGTCATACATAGAACCAGGAATGTCATGTGAGTTGA
CGGGTGCACTGGAAGAGCCCAAACACGCAACTGTGCCGGGCACATTTGATTATAACGAGTATCTTTACCGGCAGCATATT
CACTGGAATTATTCTGTCACATCTATCCATAATTGCAGCGAACCTGTAAATTTCAAGGATAAACTGCTCAGTTTGAGAAA
ATACATCGTATCATTCACAAACAGCCTGTTGCCTCCTGATTCGGCAGGAATTGTACAGGCACTTACAGTCGGTGACAGAT
TTTATGTAGAAGACGAGGTGCTTAACGCATATCAAAAGCTTGGTGTCGTCCATCTCTTGGCGATTTCAGGACTCCATGTC
GGCATTTTGACAGCCGGGTTGTTTTATATCATGATTCGTCTAGGCATAACAAGAGAAAAGGCGTCACTCCTGTTGCTGTT
ATTTCTGCCGCTCTATGTAATTTTGACAGGGGCTGCTCCTTCAGTGCTTCGCGCCGCTCTGATGTCGGGTATTTACTTAG
CTGGAAGTCTTGTTAAATGGCGGGTACATTCTGCCGGTGCAATCTGCCTTTCATACATCGTCCTCTTGCTCTTCAATCCT
TACCATCTCTTTGAAGTTGGTTTTCAACTGTCATTCGCCGTCAGTTTTTCTTTAATTCTATCCTCTTCTATTTTTCAACA
ACTCAAAACCTCCCTGGGCCAGCTGACAATGGTATCAATAATCGCTCAGCTGGGATCACTTCCTATTCTCTTGTATCATT
TCCAGCAGTTTTCGATAATCAGCATACCGATGAACATCTTGATGGTTCCTTTTTATACATTCTGTGTTTTGCCGGGGGCT
ATAGCAGGTGTTTTTCTATTAAGCCTTTCCGCTTCGGCTGGTCGATTTTTCTTCTGTTGGTTTGATTTCTTGATGAGCTG
GACCAACAGGCTGATCACAAGAATTGCAGATATTGATGTATTCACGATCATCATTGCACGTCCCGCACCTGCTCTGCTCT
TTTTATTCACGGTTACAATCATCCTATTGCTTATGGCGATTGAAAAACGTTCCTTTTCGCAGCTGGCGATTACTGGGGGT
CTTTGCTGCGCGGTGCTCTGTCTTCTTCTTATTTATCCGCGTCTTAGCTCCGAGGGAGAAGTCGATATGATTGATATTGG
GCAGGGTGACAGCATGTATGTCGGTGCTCCGCATCAGCAGGGACGTGTCTTAATTGATACAGGCGGCACTTTGTCTTACT
CGTCAGAGCCTTGGCAGGAAAAACAGCACCCGTTTTCACTTGGGGAAAAGGTGCTGATGCCGTTTTTAACCGCCAAGGGA
ATCAAACAGCTTGATGCTTTAATTCTGACGCACGCTGACCAAGATCATATCGGAGAGGCGGAGACTCTGCTGAAGCACCA
TAAAGTGAAGCGCCTTGTGATTCCGAAAGGGTTCGTTTCTGAGCCTAAAGACGAGAAAGTGCTGCGGGCAGCCAGAGAAG
AGGGCGTGACAATAGAGGAGGTGAAGCGAGGCGATGTATTGCAAATAAAGGATTTGCAGTTTCAAGTACTGTCACCGGAA
ACACCTGATCCGGCAAGCAAAAATAACTCTTCTCTCGTTCTGTGGATGAAAACGGGCGGTATGAGCTGGATCTTGACGGG
TGATCTGGAGAAAGAAGGGGAACAGGAGGTGATGAACGTGTTTCCGAATATAAAAGCAGACGTGTTAAAGGTGGGGCACC
ATGGAAGCAAAGGCTCTACCGGTGAAGAATTCATCAAACAGCTTCAGCCGAAAACGGCCATTATCTCAGCGGGAGAAAAC
AATCGGTACCATCATCCCCATCAAGAGGTTCTGCAAATATTACAGAGACATTCCATCCGCGTACTGCGTACCGATCAAAG
CGGAACGATCCAATATCGATATAAAAACAGAGTTGGAACCTTTTCTGTCTATCCTCCATATGATACATCAGATATAACAG
AGACGAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

89.304

100

0.893