Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OQE53_RS14580 Genome accession   NZ_CP111072
Coordinates   2963283..2963927 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain YFI-E109     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2958283..2968927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQE53_RS14545 - 2959468..2959899 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  OQE53_RS14550 - 2959899..2960240 (+) 342 WP_032876807.1 Na(+)/H(+) antiporter subunit C -
  OQE53_RS14555 - 2960233..2961714 (+) 1482 WP_032876804.1 Na+/H+ antiporter subunit D -
  OQE53_RS14560 - 2961720..2962196 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  OQE53_RS14565 - 2962196..2962480 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  OQE53_RS14570 mnhG 2962464..2962838 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  OQE53_RS14575 - 2962878..2963261 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  OQE53_RS14580 comA 2963283..2963927 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  OQE53_RS14585 comP 2964008..2966308 (-) 2301 WP_032876801.1 histidine kinase Regulator
  OQE53_RS14590 comX 2966322..2966495 (-) 174 WP_012118314.1 competence pheromone ComX -
  OQE53_RS14595 - 2966464..2967324 (-) 861 WP_142925231.1 polyprenyl synthetase family protein -
  OQE53_RS14600 degQ 2967532..2967672 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  OQE53_RS14605 - 2968138..2968479 (+) 342 WP_032876795.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=757605 OQE53_RS14580 WP_003152052.1 2963283..2963927(-) (comA) [Bacillus velezensis strain YFI-E109]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=757605 OQE53_RS14580 WP_003152052.1 2963283..2963927(-) (comA) [Bacillus velezensis strain YFI-E109]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGTCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864