Detailed information NTG0757591

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP57_RS05595
• Genome accession: NZ_CP124495
• Coordinates: 1163436..1164428 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0662
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1158436..1169428

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP57_RS05565 (QJP57_05565)	ispD	1158497..1159207 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJP57_RS05570 (QJP57_05570)	ispF	1159207..1159686 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP57_RS05575 (QJP57_05575)	truD	1159683..1160732 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP57_RS05580 (QJP57_05580)	surE	1160713..1161474 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP57_RS05585 (QJP57_05585)	pcm	1161468..1162094 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP57_RS05590 (QJP57_05590)	nlpD	1162279..1163373 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP57_RS05595 (QJP57_05595)	rpoS	1163436..1164428 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP57_RS05600 (QJP57_05600)	-	1164599..1165150 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJP57_RS05605 (QJP57_05605)	-	1165375..1166418 (+)	1044	WP_139507528.1	MBL fold metallo-hydrolase	-
QJP57_RS05610 (QJP57_05610)	ygbN	1166561..1167925 (-)	1365	WP_000104433.1	GntP family transporter	-
QJP57_RS05615 (QJP57_05615)	ygbM	1168014..1168790 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=757591 QJP57_RS05595 WP_000081550.1 1163436..1164428(+) (rpoS) [Escherichia coli strain AVS0662]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=757591 QJP57_RS05595 WP_000081550.1 1163436..1164428(+) (rpoS) [Escherichia coli strain AVS0662]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715