Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OLG56_RS13760 Genome accession   NZ_CP111029
Coordinates   2806553..2807158 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella sp. 2018103     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2801553..2812158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLG56_RS13745 (OLG56_13745) helD 2801770..2803824 (-) 2055 WP_023137047.1 DNA helicase IV -
  OLG56_RS13750 (OLG56_13750) - 2803948..2804394 (+) 447 WP_001261222.1 YccF domain-containing protein -
  OLG56_RS13755 (OLG56_13755) yccS 2804413..2806566 (+) 2154 WP_001726973.1 YccS family putative transporter -
  OLG56_RS13760 (OLG56_13760) sxy/tfoX 2806553..2807158 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  OLG56_RS13765 (OLG56_13765) sulA 2807375..2807884 (+) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  OLG56_RS13770 (OLG56_13770) ompA 2808241..2809293 (+) 1053 WP_001562588.1 porin OmpA -
  OLG56_RS13775 (OLG56_13775) matP 2809365..2809817 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  OLG56_RS13780 (OLG56_13780) - 2810003..2811763 (+) 1761 WP_061377407.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=757430 OLG56_RS13760 WP_001202375.1 2806553..2807158(-) (sxy/tfoX) [Salmonella sp. 2018103]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=757430 OLG56_RS13760 WP_001202375.1 2806553..2807158(-) (sxy/tfoX) [Salmonella sp. 2018103]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGTGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751