Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PHLH3_RS05050 Genome accession   NZ_AP021905
Coordinates   1056309..1057670 (+) Length   453 a.a.
NCBI ID   WP_021218793.1    Uniprot ID   A0AAU7Y669
Organism   Pseudomonas sp. Pc102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051309..1062670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHLH3_RS05020 (PHLH8_09980) - 1052327..1052809 (+) 483 WP_213628435.1 DUF934 domain-containing protein -
  PHLH3_RS05025 (PHLH8_10000) - 1053096..1054658 (+) 1563 WP_213628436.1 TerC family protein -
  PHLH3_RS05030 (PHLH8_10010) mscL 1054713..1055135 (-) 423 WP_173173459.1 large-conductance mechanosensitive channel protein MscL -
  PHLH3_RS05035 (PHLH8_10020) - 1055199..1055486 (-) 288 WP_173173458.1 DUF1272 domain-containing protein -
  PHLH3_RS05040 (PHLH8_10030) - 1055642..1055881 (+) 240 WP_111259693.1 DUF465 domain-containing protein -
  PHLH3_RS05045 - 1055993..1056328 (-) 336 WP_213628437.1 hypothetical protein -
  PHLH3_RS05050 (PHLH8_10050) radA 1056309..1057670 (+) 1362 WP_021218793.1 DNA repair protein RadA Machinery gene
  PHLH3_RS05055 (PHLH8_10060) - 1057674..1058042 (-) 369 WP_173173454.1 PilZ domain-containing protein -
  PHLH3_RS05060 (PHLH8_10070) - 1058096..1060267 (-) 2172 WP_213628438.1 hypothetical protein -
  PHLH3_RS05065 (PHLH8_10080) - 1060254..1061462 (-) 1209 WP_213628439.1 DUF3142 domain-containing protein -
  PHLH3_RS05070 (PHLH8_10090) - 1061682..1062188 (+) 507 WP_213628440.1 DUF3015 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48365.88 Da        Isoelectric Point: 7.4046

>NTDB_id=75743 PHLH3_RS05050 WP_021218793.1 1056309..1057670(+) (radA) [Pseudomonas sp. Pc102]
MAKAKRMYGCTECGSTFPKWAGQCGDCGAWNTLVETVIDGAAPPSGRAGWAGGQAQIKTLAEVSVEEMPRFSTASAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIASRFPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIIATA
RVEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALIAAIMSSLRNRPLEHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPKGNAPKEAPPGLRVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=75743 PHLH3_RS05050 WP_021218793.1 1056309..1057670(+) (radA) [Pseudomonas sp. Pc102]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTCCCCAAATGGGCCGGCCAATGCGGTGACTG
CGGGGCCTGGAACACCCTGGTGGAAACCGTGATCGACGGCGCCGCACCGCCCAGCGGGCGCGCCGGCTGGGCCGGCGGGC
AGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAGGAGATGCCGCGCTTCTCCACCGCCTCCGCCGAGCTGGATCGC
GTGCTCGGCGGCGGCCTGGTCGACGGCTCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCCACCATCCTCCT
GCAGACCCTGTGCAACATCGCCTCGCGCTTCCCCGCGCTCTACGTCACCGGTGAGGAGTCCCAGCAGCAGGTCGCCATGC
GCGCCCGCCGCCTCGGGTTGCCCGAGGACAAGCTCAAGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCCACCGCT
CGGGTCGAGAAGCCCAAGGTGATGGTGATCGACTCCATCCAGACCATCTTCACCGAGCAGCTGCAGTCCGCCCCCGGCGG
CGTGGCCCAGGTGCGCGAGAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAGGGCGCCCTGGCGGGGCCGCGCGTGCTGGAGCACATGGTCGACACGGTGCTGTATTTCGAGGGTGAG
TCCGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGGCATGAC
CGACAAGGGCCTCAAGGAGGTTTCCAACCCCTCGGCGATCTTCCTCACCCGCGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TCATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTGCAGGCCCTGGTGGACACCAGCCACCTGGCCAACCCG
CGCCGCGTGACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCATGGCGGCATTCCCAC
CCACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACGGCCTCCGACCTGGCGCTGATCGCGG
CGATCATGTCGAGCCTGCGCAACCGCCCGCTGGAGCATGACCTGCTGGTGTTCGGCGAAGTGGGGCTGTCGGGTGAGGTG
CGTCCCGTGCCCAGCGGCCAGGAGCGTTTGAAGGAAGCGGGCAAGCACGGCTTCAAGCGGGCCATCGTGCCCAAGGGCAA
CGCCCCGAAAGAGGCGCCGCCCGGGTTGCGGGTGATCGCGGTGACACGCCTGGAGCAGGCGCTGGACGCGTTGTTCGAGT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(351-427)

AAA domain (AAA_25)

(71-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.786

100

0.488
  radA Streptococcus pneumoniae Rx1

46.171

100

0.466
  radA Streptococcus pneumoniae R6

46.171

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.171

100

0.466
  radA Streptococcus pneumoniae D39

46.171

100

0.466
  radA Streptococcus mitis SK321

46.358

100

0.464
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461

Multiple sequence alignment