Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ORI88_RS13425 Genome accession   NZ_CP110999
Coordinates   2722318..2722947 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain J53-p133     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2717318..2727947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORI88_RS13410 (ORI88_13410) helD 2717560..2719614 (-) 2055 WP_001295354.1 DNA helicase IV -
  ORI88_RS13415 (ORI88_13415) yccF 2719737..2720183 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ORI88_RS13420 (ORI88_13420) yccS 2720193..2722355 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ORI88_RS13425 (ORI88_13425) sxy/tfoX 2722318..2722947 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ORI88_RS13430 (ORI88_13430) sulA 2723166..2723675 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ORI88_RS13435 (ORI88_13435) ompA 2724032..2725072 (+) 1041 WP_000750416.1 porin OmpA -
  ORI88_RS13440 (ORI88_13440) matP 2725148..2725600 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ORI88_RS13445 (ORI88_13445) ycbZ 2725786..2727546 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=757366 ORI88_RS13425 WP_000839153.1 2722318..2722947(-) (sxy/tfoX) [Escherichia coli strain J53-p133]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=757366 ORI88_RS13425 WP_000839153.1 2722318..2722947(-) (sxy/tfoX) [Escherichia coli strain J53-p133]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1