Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ORI32_RS14790 Genome accession   NZ_CP110988
Coordinates   3025314..3025943 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain XYEH3314     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3020314..3030943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORI32_RS14775 (ORI32_14760) helD 3020556..3022610 (-) 2055 WP_053263464.1 DNA helicase IV -
  ORI32_RS14780 (ORI32_14765) yccF 3022733..3023179 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ORI32_RS14785 (ORI32_14770) yccS 3023189..3025351 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ORI32_RS14790 (ORI32_14775) sxy/tfoX 3025314..3025943 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ORI32_RS14795 (ORI32_14780) sulA 3026162..3026671 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ORI32_RS14800 (ORI32_14785) ompA 3027028..3028068 (+) 1041 WP_266042209.1 porin OmpA -
  ORI32_RS14805 (ORI32_14790) matP 3028144..3028596 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ORI32_RS14810 (ORI32_14795) ycbZ 3028782..3030542 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=757322 ORI32_RS14790 WP_000839153.1 3025314..3025943(-) (sxy/tfoX) [Escherichia coli strain XYEH3314]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=757322 ORI32_RS14790 WP_000839153.1 3025314..3025943(-) (sxy/tfoX) [Escherichia coli strain XYEH3314]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1