Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OQ483_RS08565 Genome accession   NZ_CP110985
Coordinates   1812075..1812701 (+) Length   208 a.a.
NCBI ID   WP_041910603.1    Uniprot ID   A0A8E1RPS6
Organism   Enterobacter bugandensis strain E105227     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807075..1817701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ483_RS08545 (OQ483_08535) - 1807476..1809236 (-) 1761 WP_048958376.1 Lon protease family protein -
  OQ483_RS08550 (OQ483_08540) matP 1809422..1809874 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  OQ483_RS08555 (OQ483_08545) ompA 1809938..1810993 (-) 1056 WP_108780329.1 porin OmpA -
  OQ483_RS08560 (OQ483_08550) sulA 1811348..1811857 (-) 510 WP_041910604.1 SOS-induced cell division inhibitor SulA -
  OQ483_RS08565 (OQ483_08555) sxy/tfoX 1812075..1812701 (+) 627 WP_041910603.1 TfoX/Sxy family DNA transformation protein Regulator
  OQ483_RS08570 (OQ483_08560) yccS 1812658..1814820 (-) 2163 WP_041910602.1 YccS family putative transporter -
  OQ483_RS08575 (OQ483_08565) - 1814840..1815286 (-) 447 WP_041910601.1 YccF domain-containing protein -
  OQ483_RS08580 (OQ483_08570) helD 1815410..1817464 (+) 2055 WP_045261704.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.61 Da        Isoelectric Point: 9.2151

>NTDB_id=757290 OQ483_RS08565 WP_041910603.1 1812075..1812701(+) (sxy/tfoX) [Enterobacter bugandensis strain E105227]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=757290 OQ483_RS08565 WP_041910603.1 1812075..1812701(+) (sxy/tfoX) [Enterobacter bugandensis strain E105227]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCACTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGCGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTTATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGTTGCTCT
TTGAAGCGGGCATCACCAACGAAGAAACGCTGCGGGCGCTTGGCGCAAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGGGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.081

95.192

0.553