Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ORI33_RS13930 Genome accession   NZ_CP110978
Coordinates   2879080..2879709 (-) Length   209 a.a.
NCBI ID   WP_094337273.1    Uniprot ID   -
Organism   Escherichia coli strain XYEH3934     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2874080..2884709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORI33_RS13915 (ORI33_13915) helD 2874322..2876376 (-) 2055 WP_266059141.1 DNA helicase IV -
  ORI33_RS13920 (ORI33_13920) yccF 2876499..2876945 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ORI33_RS13925 (ORI33_13925) yccS 2876955..2879117 (+) 2163 WP_000875045.1 YccS family putative transporter -
  ORI33_RS13930 (ORI33_13930) sxy/tfoX 2879080..2879709 (-) 630 WP_094337273.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ORI33_RS13935 (ORI33_13935) sulA 2879928..2880437 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ORI33_RS13940 (ORI33_13940) ompA 2880794..2881846 (+) 1053 WP_032223517.1 porin OmpA -
  ORI33_RS13945 (ORI33_13945) matP 2881921..2882373 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ORI33_RS13950 (ORI33_13950) ycbZ 2882559..2884319 (+) 1761 WP_053900898.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.01 Da        Isoelectric Point: 9.2180

>NTDB_id=757252 ORI33_RS13930 WP_094337273.1 2879080..2879709(-) (sxy/tfoX) [Escherichia coli strain XYEH3934]
MKSLSYKRIYKSQEYLSTLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=757252 ORI33_RS13930 WP_094337273.1 2879080..2879709(-) (sxy/tfoX) [Escherichia coli strain XYEH3934]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGTCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995