Detailed information NTG0757246

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP96_RS05765
• Genome accession: NZ_CP124483
• Coordinates: 1207490..1208482 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0575
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1202490..1213482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP96_RS05735 (QJP96_05735)	ispD	1202551..1203261 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJP96_RS05740 (QJP96_05740)	ispF	1203261..1203740 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP96_RS05745 (QJP96_05745)	truD	1203737..1204786 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP96_RS05750 (QJP96_05750)	surE	1204767..1205528 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP96_RS05755 (QJP96_05755)	pcm	1205522..1206148 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP96_RS05760 (QJP96_05760)	nlpD	1206333..1207427 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP96_RS05765 (QJP96_05765)	rpoS	1207490..1208482 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP96_RS05770 (QJP96_05770)	-	1208653..1209204 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJP96_RS05775 (QJP96_05775)	-	1209429..1210472 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP96_RS05780 (QJP96_05780)	ygbN	1210615..1211979 (-)	1365	WP_000104433.1	GntP family transporter	-
QJP96_RS05785 (QJP96_05785)	ygbM	1212068..1212844 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=757246 QJP96_RS05765 WP_000081550.1 1207490..1208482(+) (rpoS) [Escherichia coli strain AVS0575]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=757246 QJP96_RS05765 WP_000081550.1 1207490..1208482(+) (rpoS) [Escherichia coli strain AVS0575]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715