Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KI243_RS28335 Genome accession   NZ_AP021904
Coordinates   6408554..6409921 (-) Length   455 a.a.
NCBI ID   WP_017123424.1    Uniprot ID   -
Organism   Pseudomonas sp. Ost2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6403554..6414921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI243_RS28310 (PHLH7_55840) yjiA 6403786..6404757 (-) 972 WP_042934219.1 GTPase -
  KI243_RS28315 (PHLH7_55850) - 6404891..6405088 (-) 198 WP_017123431.1 YbdD/YjiX family protein -
  KI243_RS28320 (PHLH7_55860) - 6405104..6407170 (-) 2067 WP_103032777.1 carbon starvation CstA family protein -
  KI243_RS28325 (PHLH7_55870) - 6407390..6407758 (+) 369 WP_177084026.1 PilZ domain-containing protein -
  KI243_RS28330 (PHLH7_55880) - 6407803..6408531 (-) 729 WP_017123425.1 hypothetical protein -
  KI243_RS28335 (PHLH7_55890) radA 6408554..6409921 (-) 1368 WP_017123424.1 DNA repair protein RadA Machinery gene
  KI243_RS28340 (PHLH7_55900) - 6409968..6410519 (-) 552 WP_103032778.1 ankyrin repeat domain-containing protein -
  KI243_RS28345 (PHLH7_55910) katB 6410716..6412257 (-) 1542 WP_017123423.1 catalase KatB -
  KI243_RS28350 (PHLH7_55920) mscL 6412543..6412956 (+) 414 WP_017123422.1 large-conductance mechanosensitive channel protein MscL -
  KI243_RS28355 (PHLH7_55930) - 6413103..6413879 (-) 777 WP_212810148.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48726.24 Da        Isoelectric Point: 7.1317

>NTDB_id=75724 KI243_RS28335 WP_017123424.1 6408554..6409921(-) (radA) [Pseudomonas sp. Ost2]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETLVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLKIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=75724 KI243_RS28335 WP_017123424.1 6408554..6409921(-) (radA) [Pseudomonas sp. Ost2]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
TGGTGCCTGGAATACCCTGACCGAGACCCTGGTGGAAAGCGGCGGCGCGGCGGCGCCCAGCGGCCGTACCGGTTGGGCCG
GACAGCAGGCGCAGATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAAATTCCCCGTTTCTCCACCGCCTCCGGTGAGCTG
GACCGCGTGCTCGGCGGCGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGCGGCGACCCTGGCATCGGCAAGTCGACCAT
TCTCCTGCAGACCCTGTGCAACCTCGCCACGCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCGCAACAACAGGTGG
CGATGCGCGCGCGTCGGCTGGGGCTGCCCCAGGACCAGTTGCGGGTGATGACCGAAACCTGCATCGAGACCATCATCGCC
ACCGCCCGGGTGGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCGCC
GGGAGGCGTTTCCCAGGTGCGCGAAAGTGCGGCCTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAGGAGGGCGCGCTGGCCGGTCCGCGGGTCCTCGAACATATGGTCGACACGGTGCTGTACTTCGAA
GGTGAGTCCGACGGTCGCCTGCGTCTGTTGCGGGCGGTGAAAAACCGTTTCGGCGCGGTGAACGAGCTGGGGGTGTTCGG
CATGACCGACCGGGGGCTGAAGGAAGTCTCCAATCCGTCGGCGATTTTTCTCACCCGGGCCCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCCACCTGGGAGGGGACCCGGCCGATGCTGGTAGAAGTCCAGGCCCTGGTCGACGACAGCCATATGGCC
AATCCACGGCGGGTGACCCTCGGGCTGGATCAGAACCGCCTGGCGATGCTGTTGGCGGTCCTGCACCGTCACGGCGGTAT
TCCGACCCATGACCAGGATGTCTTCCTCAACGTCGTGGGTGGCGTCAAGGTACTGGAGACCGCCTCCGACCTGGCGCTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAATCGGCCGCTGCCCCATGACCTGCTGGTGTTCGGCGAGGTCGGTCTGTCCGGC
GAGGTGCGTCCGGTGCCCAGTGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCACGGTTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAAGAGGCGCCGCCGGGGTTGAAAATCATTGCCGTCACGCGCCTGGAGCAGGCGTTGGACGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

46.087

100

0.466
  radA Streptococcus pneumoniae R6

46.087

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.466
  radA Streptococcus pneumoniae D39

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464
  radA Streptococcus mitis NCTC 12261

46.053

100

0.462

Multiple sequence alignment