Detailed information NTG0757197

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP55_RS18705
• Genome accession: NZ_CP124481
• Coordinates: 3825319..3826311 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0756
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3820319..3831311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP55_RS18685 (QJP55_18685)	ygbM	3820957..3821733 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP55_RS18690 (QJP55_18690)	ygbN	3821822..3823186 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP55_RS18695 (QJP55_18695)	-	3823329..3824372 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP55_RS18700 (QJP55_18700)	-	3824597..3825148 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP55_RS18705 (QJP55_18705)	rpoS	3825319..3826311 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP55_RS18710 (QJP55_18710)	nlpD	3826374..3827468 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP55_RS18715 (QJP55_18715)	pcm	3827653..3828279 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP55_RS18720 (QJP55_18720)	surE	3828273..3829034 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP55_RS18725 (QJP55_18725)	truD	3829015..3830064 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP55_RS18730 (QJP55_18730)	ispF	3830061..3830540 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP55_RS18735 (QJP55_18735)	ispD	3830540..3831250 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=757197 QJP55_RS18705 WP_000081550.1 3825319..3826311(-) (rpoS) [Escherichia coli strain AVS0756]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=757197 QJP55_RS18705 WP_000081550.1 3825319..3826311(-) (rpoS) [Escherichia coli strain AVS0756]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715