Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QJP55_RS09415 Genome accession   NZ_CP124481
Coordinates   1971697..1972326 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain AVS0756     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966697..1977326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP55_RS09395 (QJP55_09395) ycbZ 1967087..1968847 (-) 1761 WP_000156502.1 Lon protease family protein -
  QJP55_RS09400 (QJP55_09400) matP 1969033..1969485 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QJP55_RS09405 (QJP55_09405) ompA 1969561..1970613 (-) 1053 WP_001346420.1 porin OmpA -
  QJP55_RS09410 (QJP55_09410) sulA 1970969..1971478 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  QJP55_RS09415 (QJP55_09415) sxy/tfoX 1971697..1972326 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QJP55_RS09420 (QJP55_09420) yccS 1972289..1974451 (-) 2163 WP_283201888.1 YccS family putative transporter -
  QJP55_RS09425 (QJP55_09425) yccF 1974461..1974907 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QJP55_RS09430 (QJP55_09430) helD 1975030..1977084 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=757172 QJP55_RS09415 WP_000839151.1 1971697..1972326(+) (sxy/tfoX) [Escherichia coli strain AVS0756]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=757172 QJP55_RS09415 WP_000839151.1 1971697..1972326(+) (sxy/tfoX) [Escherichia coli strain AVS0756]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995