Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QJP78_RS03940 Genome accession   NZ_CP124475
Coordinates   809015..810211 (-) Length   398 a.a.
NCBI ID   WP_001161853.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0969     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 804015..815211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP78_RS03930 (QJP78_03930) - 806289..807662 (+) 1374 WP_001546116.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -
  QJP78_RS03935 (QJP78_03935) - 807679..808815 (+) 1137 WP_000115757.1 hypothetical protein -
  QJP78_RS03940 (QJP78_03940) kpsS 809015..810211 (-) 1197 WP_001161853.1 capsular biosynthesis protein Regulator
  QJP78_RS03945 (QJP78_03945) - 810246..812273 (-) 2028 WP_001546115.1 capsular polysaccharide biosynthesis protein -
  QJP78_RS03950 (QJP78_03950) kdsB 812270..813010 (-) 741 WP_000030748.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QJP78_RS03955 (QJP78_03955) - 813020..814696 (-) 1677 WP_001546114.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 47279.63 Da        Isoelectric Point: 10.0630

>NTDB_id=757067 QJP78_RS03940 WP_001161853.1 809015..810211(-) (kpsS) [Escherichia coli strain AVS0969]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLTPSTM
KRIGHAMWYYLIGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGGRCFTITL

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=757067 QJP78_RS03940 WP_001161853.1 809015..810211(-) (kpsS) [Escherichia coli strain AVS0969]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTCGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACATTATCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGTATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCATGTTGAGAACTTAACACCTTCAACAATG
AAACGTATTGGCCATGCGATGTGGTATTACCTGATAGGCTGGCATTACCGTCATGAGTTTCCTCGCTATCGCCATCACAA
ATCATTTTCTCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTACGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTTAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGGTAGATGTTTTACCATAACATTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

97.739

0.392