Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ORG43_RS13880 Genome accession   NZ_CP110934
Coordinates   2797895..2798500 (-) Length   201 a.a.
NCBI ID   WP_001539651.1    Uniprot ID   A0A5H5BIX2
Organism   Salmonella enterica strain CVCC 519     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2792895..2803500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORG43_RS13865 (ORG43_13865) helD 2793112..2795166 (-) 2055 WP_001539652.1 DNA helicase IV -
  ORG43_RS13870 (ORG43_13870) - 2795290..2795736 (+) 447 WP_001261222.1 YccF domain-containing protein -
  ORG43_RS13875 (ORG43_13875) yccS 2795755..2797908 (+) 2154 WP_000950883.1 YccS family putative transporter -
  ORG43_RS13880 (ORG43_13880) sxy/tfoX 2797895..2798500 (-) 606 WP_001539651.1 TfoX/Sxy family DNA transformation protein Regulator
  ORG43_RS13885 (ORG43_13885) sulA 2798717..2799226 (+) 510 WP_000288731.1 SOS-induced cell division inhibitor SulA -
  ORG43_RS13890 (ORG43_13890) ompA 2799583..2800635 (+) 1053 WP_001539650.1 porin OmpA -
  ORG43_RS13895 (ORG43_13895) matP 2800707..2801159 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ORG43_RS13900 (ORG43_13900) - 2801345..2803105 (+) 1761 WP_001539649.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=757029 ORG43_RS13880 WP_001539651.1 2797895..2798500(-) (sxy/tfoX) [Salmonella enterica strain CVCC 519]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSITAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=757029 ORG43_RS13880 WP_001539651.1 2797895..2798500(-) (sxy/tfoX) [Salmonella enterica strain CVCC 519]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAGTATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGATTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5H5BIX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746