Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QJB08_RS16960 Genome accession   NZ_CP124467
Coordinates   3474897..3475502 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AVS0747     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3469897..3480502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJB08_RS16940 (QJB08_16940) aes 3470038..3470997 (+) 960 WP_000801794.1 acetyl esterase -
  QJB08_RS16945 (QJB08_16945) hemH 3470994..3471956 (-) 963 WP_001250114.1 ferrochelatase -
  QJB08_RS16950 (QJB08_16950) adk 3472088..3472732 (-) 645 WP_001220233.1 adenylate kinase -
  QJB08_RS16955 (QJB08_16955) htpG 3472913..3474787 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  QJB08_RS16960 (QJB08_16960) recR 3474897..3475502 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QJB08_RS16965 (QJB08_16965) ybaB 3475502..3475831 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QJB08_RS16970 (QJB08_16970) dnaX 3475884..3477815 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  QJB08_RS16975 (QJB08_16975) apt 3477944..3478495 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QJB08_RS16980 (QJB08_16980) ybaN 3478648..3479025 (-) 378 WP_001188900.1 DUF454 family protein -
  QJB08_RS16985 (QJB08_16985) priC 3479095..3479622 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  QJB08_RS16990 (QJB08_16990) rsmS 3479636..3479800 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=756933 QJB08_RS16960 WP_001195025.1 3474897..3475502(-) (recR) [Escherichia coli strain AVS0747]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=756933 QJB08_RS16960 WP_001195025.1 3474897..3475502(-) (recR) [Escherichia coli strain AVS0747]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443