Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KI231_RS25400 Genome accession   NZ_AP021903
Coordinates   5656078..5657445 (-) Length   455 a.a.
NCBI ID   WP_003228407.1    Uniprot ID   A0A031FPN1
Organism   Pseudomonas sp. Seg1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5651078..5662445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI231_RS25375 (PHLH6_50070) - 5651204..5651913 (+) 710 Protein_5008 GntR family transcriptional regulator -
  KI231_RS25380 (PHLH6_50080) yjiA 5652018..5652989 (-) 972 WP_213026635.1 GTPase -
  KI231_RS25385 (PHLH6_50090) - 5653143..5653340 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  KI231_RS25390 (PHLH6_50100) - 5653356..5655422 (-) 2067 WP_103303619.1 carbon starvation CstA family protein -
  KI231_RS25395 (PHLH6_50110) - 5655582..5655950 (+) 369 WP_213026636.1 PilZ domain-containing protein -
  KI231_RS25400 (PHLH6_50120) radA 5656078..5657445 (-) 1368 WP_003228407.1 DNA repair protein RadA Machinery gene
  KI231_RS25405 (PHLH6_50130) - 5657491..5658036 (-) 546 WP_213026637.1 ankyrin repeat domain-containing protein -
  KI231_RS25410 (PHLH6_50140) katB 5658097..5659638 (-) 1542 WP_213026638.1 catalase KatB -
  KI231_RS25415 (PHLH6_50150) mscL 5659926..5660339 (+) 414 WP_103303624.1 large-conductance mechanosensitive channel protein MscL -
  KI231_RS25420 (PHLH6_50160) - 5660383..5661159 (-) 777 WP_103303625.1 ferredoxin--NADP reductase -
  KI231_RS25425 (PHLH6_50170) - 5661482..5662195 (+) 714 WP_213026639.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48731.21 Da        Isoelectric Point: 6.8987

>NTDB_id=75693 KI231_RS25400 WP_003228407.1 5656078..5657445(-) (radA) [Pseudomonas sp. Seg1]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=75693 KI231_RS25400 WP_003228407.1 5656078..5657445(-) (radA) [Pseudomonas sp. Seg1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGTGGCGAGTG
CGGTGCCTGGAACACCCTCACTGAAACCATGATCGAGAGCGGCGGCGCCACCGCGCCCACCGGCCGCACCGGTTGGGCTG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCATCGAGGAGATTCCACGTTTTTCCACCGCGTCCGGTGAACTC
GATCGCGTGCTCGGCGGTGGTCTGGTGGATGGTTCGGTGGTGCTGATCGGCGGTGATCCGGGGATCGGCAAGTCGACGAT
TCTGTTGCAGACCCTGTGCAATCTCGCCAAGAGCATGCCAGCGCTGTACGTCACCGGCGAGGAATCCCAACAGCAGGTGG
CCATGCGCGCCCGTCGCCTCGGCTTGCCGCAGGACCAGTTGCGGGTGATGACCGAGACCTGTATCGAAACCATCATCGCC
ACCGCCCGTCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACAATCTTCACTGAACAACTGCAATCGGCGCC
GGGCGGCGTTTCCCAAGTGCGCGAAAGTGCGGCGTTGCTGGTGCGCTATGCCAAGCAAAGCGGCACAGCGATTTTCCTTG
TTGGTCACGTCACCAAGGAAGGCGCGCTGGCGGGCCCGCGCGTGCTGGAACATATGGTCGATACCGTGCTGTATTTCGAA
GGTGAATCCGACGGGCGTTTGCGTTTGCTGCGGGCGGTGAAAAACCGTTTCGGTGCGGTCAACGAGCTGGGTGTGTTCGG
CATGACGGACAAAGGCCTGAAGGAAGTCTCCAATCCTTCGGCGATTTTCCTTACCCGTGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCAACGTGGGAGGGCACGCGACCGATGCTGGTGGAGGTGCAGGCACTGGTCGATGACAGCCACTTGGCC
AACCCGCGTCGGGTGACGCTGGGGCTTGATCAGAATCGTCTGGCAATGTTGCTCGCGGTTTTACACCGTCATGGTGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAATGTGGTCGGCGGGGTGAAGGTGCTGGAAACCGCATCCGACCTGGCGTTGA
TGGCGGCCGTGATGTCGAGCCTGCGCAATCGGCCATTGCCCCATGATCTGCTGGTGTTTGGCGAAGTCGGCTTGTCCGGC
GAGGTGCGCCCGGTGCCGAGCGGTCAGGAGCGTTTGAAAGAAGCAGCCAAGCATGGCTTCAAACGGGCGATCGTACCCAA
GGGCAATGCACCAAAAGAAGCACCTGCGGGCTTGCAGATCATCGCTGTCACCCGCCTCGAACAAGCCCTCGACGCGCTCT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031FPN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464

Multiple sequence alignment