Detailed information NTG0756902

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJB08_RS05550
• Genome accession: NZ_CP124467
• Coordinates: 1138005..1138997 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0747
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1133005..1143997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJB08_RS05520 (QJB08_05520)	ispD	1133066..1133776 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJB08_RS05525 (QJB08_05525)	ispF	1133776..1134255 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJB08_RS05530 (QJB08_05530)	truD	1134252..1135301 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJB08_RS05535 (QJB08_05535)	surE	1135282..1136043 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJB08_RS05540 (QJB08_05540)	pcm	1136037..1136663 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJB08_RS05545 (QJB08_05545)	nlpD	1136848..1137942 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJB08_RS05550 (QJB08_05550)	rpoS	1138005..1138997 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJB08_RS05555 (QJB08_05555)	-	1139168..1139719 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJB08_RS05560 (QJB08_05560)	-	1139944..1140987 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJB08_RS05565 (QJB08_05565)	ygbN	1141130..1142494 (-)	1365	WP_000104433.1	GntP family transporter	-
QJB08_RS05570 (QJB08_05570)	ygbM	1142583..1143359 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=756902 QJB08_RS05550 WP_000081550.1 1138005..1138997(+) (rpoS) [Escherichia coli strain AVS0747]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=756902 QJB08_RS05550 WP_000081550.1 1138005..1138997(+) (rpoS) [Escherichia coli strain AVS0747]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715