Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OQW59_RS11240 Genome accession   NZ_CP110894
Coordinates   1758996..1759610 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CF1807     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753996..1764610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQW59_RS11220 (OQW59_11220) - 1754365..1756125 (-) 1761 WP_003035878.1 Lon protease family protein -
  OQW59_RS11225 (OQW59_11225) matP 1756311..1756763 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  OQW59_RS11230 (OQW59_11230) ompA 1756853..1757911 (-) 1059 WP_088902481.1 porin OmpA -
  OQW59_RS11235 (OQW59_11235) sulA 1758269..1758778 (-) 510 WP_088902480.1 SOS-induced cell division inhibitor SulA -
  OQW59_RS11240 (OQW59_11240) sxy/tfoX 1758996..1759610 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  OQW59_RS11245 (OQW59_11245) yccS 1759588..1761741 (-) 2154 WP_032941200.1 YccS family putative transporter -
  OQW59_RS11250 (OQW59_11250) - 1761760..1762206 (-) 447 WP_213169299.1 YccF domain-containing protein -
  OQW59_RS11255 (OQW59_11255) helD 1762332..1764386 (+) 2055 WP_265867785.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=756864 OQW59_RS11240 WP_003035889.1 1758996..1759610(+) (sxy/tfoX) [Citrobacter freundii strain CF1807]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=756864 OQW59_RS11240 WP_003035889.1 1758996..1759610(+) (sxy/tfoX) [Citrobacter freundii strain CF1807]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686