Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ODU73_RS05690 Genome accession   NZ_CP110889
Coordinates   1247191..1248099 (+) Length   302 a.a.
NCBI ID   WP_034837910.1    Uniprot ID   A0A1B1YCM9
Organism   Thermoclostridium stercorarium strain RKWS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242191..1253099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODU73_RS14345 smc 1243540..1247118 (+) 3579 Protein_1109 chromosome segregation protein SMC -
  ODU73_RS05690 (ODU73_001138) pilA 1247191..1248099 (+) 909 WP_034837910.1 signal recognition particle-docking protein FtsY Machinery gene
  ODU73_RS05695 (ODU73_001139) - 1248240..1249733 (+) 1494 WP_015358830.1 IMP dehydrogenase -
  ODU73_RS05700 (ODU73_001140) - 1250032..1250691 (+) 660 WP_410177102.1 ClpP family protease -
  ODU73_RS05705 (ODU73_001141) - 1250688..1250954 (+) 267 WP_265976716.1 YlzJ-like family protein -
  ODU73_RS05710 (ODU73_001142) serA 1251423..1253027 (+) 1605 WP_015358833.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 32807.02 Da        Isoelectric Point: 5.8071

>NTDB_id=756850 ODU73_RS05690 WP_034837910.1 1247191..1248099(+) (pilA) [Thermoclostridium stercorarium strain RKWS1]
MSFFEKLKNGLKKTRESITQRIDQLLVSMGKIDEELFEELEEILITSDVGVETTLKIIDDLKQRVKSEKVTDPRQVKNLL
KEEITSILSSGDTGLHLNTKPSVIVVVGVNGVGKTTSIGKMCHMLKMQGKKVLVAAGDTFRAAAIDQLEIWAKRAGVDII
KHAEGSDPSAVIFDAIQAAKARGYDVVICDTAGRLHTKKNLMEELKKVFRIISRELPDADIETLLVLDATTGQNAVSQAR
TFAEATGVTGLILTKLDGTAKGGIIVSIKSELDIPVKFIGVGEKIDDLQPFDAASFAEALFS

Nucleotide


Download         Length: 909 bp        

>NTDB_id=756850 ODU73_RS05690 WP_034837910.1 1247191..1248099(+) (pilA) [Thermoclostridium stercorarium strain RKWS1]
ATGTCTTTTTTTGAGAAACTGAAAAACGGTCTGAAAAAAACAAGGGAAAGCATTACACAAAGAATTGATCAGTTGCTTGT
TTCAATGGGCAAAATAGATGAGGAGCTATTTGAAGAGCTGGAGGAAATACTTATTACCTCCGACGTGGGCGTTGAAACAA
CGCTTAAAATAATTGATGATTTGAAACAAAGGGTAAAAAGCGAGAAAGTAACCGATCCCAGGCAGGTAAAAAATCTGTTA
AAGGAAGAAATAACCAGTATTTTAAGTTCGGGTGACACCGGGCTGCACCTTAACACAAAGCCTTCGGTAATTGTGGTGGT
TGGTGTCAATGGCGTGGGCAAAACCACATCAATAGGCAAGATGTGCCATATGCTGAAAATGCAGGGGAAAAAGGTTCTCG
TAGCAGCAGGTGATACTTTCAGGGCGGCGGCGATAGATCAGCTTGAAATATGGGCTAAAAGGGCAGGGGTGGATATAATA
AAGCATGCCGAGGGTTCTGATCCGTCAGCGGTTATTTTTGACGCAATTCAGGCGGCAAAGGCACGGGGATATGATGTGGT
GATCTGTGACACCGCGGGGCGTCTGCATACCAAAAAGAACCTGATGGAAGAGCTCAAGAAGGTTTTCAGGATTATCAGCC
GGGAACTCCCCGATGCGGATATTGAAACACTTCTGGTCCTTGATGCCACGACAGGTCAGAACGCCGTCTCGCAGGCGAGA
ACCTTTGCCGAAGCCACCGGTGTTACGGGACTGATTCTTACAAAGCTTGACGGTACGGCAAAAGGAGGAATTATAGTATC
AATTAAGTCTGAGCTTGACATTCCGGTAAAATTCATAGGTGTCGGGGAAAAAATAGATGATCTGCAGCCTTTTGACGCCG
CAAGTTTTGCCGAAGCTTTGTTTTCATAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(19-84)

SRP54-type protein, GTPase domain (SRP54)

(101-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1YCM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.185

100

0.483