Detailed information NTG0756818

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP79_RS07685
• Genome accession: NZ_CP124460
• Coordinates: 1557836..1558828 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0947
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1552836..1563828

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP79_RS07665 (QJP79_07665)	ygbM	1553474..1554250 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP79_RS07670 (QJP79_07670)	ygbN	1554339..1555703 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP79_RS07675 (QJP79_07675)	-	1555846..1556889 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP79_RS07680 (QJP79_07680)	-	1557114..1557665 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP79_RS07685 (QJP79_07685)	rpoS	1557836..1558828 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP79_RS07690 (QJP79_07690)	nlpD	1558891..1559985 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP79_RS07695 (QJP79_07695)	pcm	1560170..1560796 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP79_RS07700 (QJP79_07700)	surE	1560790..1561551 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP79_RS07705 (QJP79_07705)	truD	1561532..1562581 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP79_RS07710 (QJP79_07710)	ispF	1562578..1563057 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP79_RS07715 (QJP79_07715)	ispD	1563057..1563767 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=756818 QJP79_RS07685 WP_000081550.1 1557836..1558828(-) (rpoS) [Escherichia coli strain AVS0947]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=756818 QJP79_RS07685 WP_000081550.1 1557836..1558828(-) (rpoS) [Escherichia coli strain AVS0947]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715